View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19475_high_71 (Length: 251)
Name: NF19475_high_71
Description: NF19475
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19475_high_71 |
 | |
|
| [»] chr2 (2 HSPs) |
| |
|
| [»] chr5 (1 HSPs) |
| |
|
| [»] chr7 (1 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 14 - 251
Target Start/End: Original strand, 4313926 - 4314163
Alignment:
| Q |
14 |
aatatcatagtttcccaagattggatcaatgaacgtggtaaatgataaatgtcgagtcttggtaccaatatttgtttcatttctgagttcttctactctg |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
4313926 |
aatatcatagtttcccaagattggatcaatgaacgtggtaaatgataaatgtcgagtcttggtaccaatatttgtttcatttccgagttcttctactctg |
4314025 |
T |
|
| Q |
114 |
taatagaattctccaccaagcaatgtggccaaatcatgcactaggtcatgcatnnnnnnnctcttgttctcacttcctgaacattgaaaaaatgaccttg |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4314026 |
taatagaattctccaccaagcaatgtggccaaatcatgcaccaggtcatgcataacaaaactcttgttctcacttcctgaacattgaaaaaatgaccttg |
4314125 |
T |
|
| Q |
214 |
aaactaagtcattaaaatattcattaccaacttcttct |
251 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4314126 |
aaactaagtcattaaaatattcattaccaacttcttct |
4314163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 9 - 251
Target Start/End: Complemental strand, 4254565 - 4254323
Alignment:
| Q |
9 |
cgaagaatatcatagtttcccaagattggatcaatgaacgtggtaaatgataaatgtcgagtcttggtaccaatatttgtttcatttctgagttcttcta |
108 |
Q |
| |
|
|||| ||||||| || || |||||||||||||| ||||| ||||||||||||| ||||| || |||||||| || ||||| || | || |||| | |
|
|
| T |
4254565 |
cgaaaaatatcaaagctttccaagattggatcactgaactcactaaatgataaatgacgagtgttagtaccaatcttagtttctttcccaagctcttatg |
4254466 |
T |
|
| Q |
109 |
ctctgtaatagaattctccaccaagcaatgtggccaaatcatgcactaggtcatgcatnnnnnnnctcttgttctcacttcctgaacattgaaaaaatga |
208 |
Q |
| |
|
|||| |||||||||||||| |||| ||||| || ||||||||||| || |||||||| |||| ||||||| | || |||| |||||||||||| |
|
|
| T |
4254465 |
ttctgaaatagaattctccatcaagaaatgttgctaaatcatgcaccagatcatgcatcacaaaactctggttctcattcccggaacgttgaaaaaatga |
4254366 |
T |
|
| Q |
209 |
ccttgaaactaagtcattaaaatattcattaccaacttcttct |
251 |
Q |
| |
|
|| ||| |||||||||||||||| ||| ||||||||||||| |
|
|
| T |
4254365 |
tctagaagctaagtcattaaaatacccataaccaacttcttct |
4254323 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 125; Significance: 2e-64; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 14 - 251
Target Start/End: Complemental strand, 41934003 - 41933766
Alignment:
| Q |
14 |
aatatcatagtttcccaagattggatcaatgaacgtggtaaatgataaatgtcgagtcttggtaccaatatttgtttcatttctgagttcttctactctg |
113 |
Q |
| |
|
||||||| ||||| || ||||||||||| |||| ||| ||||||||||||| ||||||||||||| ||| ||||||||||||| ||||||||| |||| |
|
|
| T |
41934003 |
aatatcaaagttttccgagattggatcagtgaatgtgctaaatgataaatgacgagtcttggtactaatctttgtttcatttccaagttcttctgttctg |
41933904 |
T |
|
| Q |
114 |
taatagaattctccaccaagcaatgtggccaaatcatgcactaggtcatgcatnnnnnnnctcttgttctcacttcctgaacattgaaaaaatgaccttg |
213 |
Q |
| |
|
||||||||||| ||||| ||||| ||||| ||||| |||||||| |||||||| || ||||||||| |||| |||||||||||||||||||||| |
|
|
| T |
41933903 |
taatagaattccccaccgagcaacgtggctaaatcgtgcactagatcatgcatcacaaaacttttgttctcatttccagaacattgaaaaaatgaccttg |
41933804 |
T |
|
| Q |
214 |
aaactaagtcattaaaatattcattaccaacttcttct |
251 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
41933803 |
aagctaagtcattaaaatattcattaccaacttcttct |
41933766 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 55 - 251
Target Start/End: Original strand, 34802043 - 34802239
Alignment:
| Q |
55 |
atgataaatgtcgagtcttggtaccaatatttgtttcatttctgagttcttctactctgtaatagaattctccaccaagcaatgtggccaaatcatgcac |
154 |
Q |
| |
|
||||||| || ||||||||||||||||| |||||||| || | |||||||| ||| ||||||| |||||||| | ||| || || ||||||||||| |
|
|
| T |
34802043 |
atgataagtgacgagtcttggtaccaatctttgtttctttccctagttcttccgttctaaaatagaactctccacctatcaacgttgctaaatcatgcac |
34802142 |
T |
|
| Q |
155 |
taggtcatgcatnnnnnnnctcttgttctcacttcctgaacattgaaaaaatgaccttgaaactaagtcattaaaatattcattaccaacttcttct |
251 |
Q |
| |
|
||| |||||||| |||| ||| |||| || |||| ||||||||||| |||||| |||||||||||||||| ||| || |||||||||| |
|
|
| T |
34802143 |
tagatcatgcatcacaaaactctcattcccactcccagaacgatgaaaaaatgatcttgaagctaagtcattaaaatacccataactaacttcttct |
34802239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University