View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19475_high_74 (Length: 250)
Name: NF19475_high_74
Description: NF19475
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19475_high_74 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 17 - 250
Target Start/End: Original strand, 11960629 - 11960860
Alignment:
| Q |
17 |
acacctatgtaaggacagataaaggatataaataatcaagccaaaattatgatattatagtcaaatttcacaacccatgttaagatgttattatttacca |
116 |
Q |
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| T |
11960629 |
acacctatgtaaggacagataaaggatataaataatcaagccaaaattatgatattatagtcaaatttcacaacccatgttaagatgttattatttacca |
11960728 |
T |
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| Q |
117 |
ctcttgatatcgatccggtgcctcaaagtgaaaacatcatagccatgtttttagaggtggtaactttaattcaacacctccatgctgaccagtatacaag |
216 |
Q |
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||||||||||||||||||||||||||||| || | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11960729 |
ctcttgatatcgatccggtgcctcaaagt--aactttaatagccatgtttttagaggtggtaactttaattcaacacctccatgctgaccagtatacaag |
11960826 |
T |
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| Q |
217 |
cataccaaaaatcatttgtatgactgttgctatc |
250 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
11960827 |
cataccaaaaatcatttgtatgactgttgctatc |
11960860 |
T |
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