View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19475_high_77 (Length: 244)
Name: NF19475_high_77
Description: NF19475
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19475_high_77 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 157; Significance: 1e-83; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 70 - 230
Target Start/End: Complemental strand, 129097 - 128937
Alignment:
| Q |
70 |
cttaaagttaagaaacgcgtaacctctatttattcccgatcgtttccctctgctgcacatgaattggaaaataacaattacgattttctccaattgattt |
169 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
129097 |
cttaaagttaagaaacgcgtaacctctatttattcccgatcgtttccctctgctgcacatgaattggaaaataaaaattacgattttctccaattgattt |
128998 |
T |
|
| Q |
170 |
gcttcccaatgttccttcaatcattttggttcccaatattatgttttgtgcaattgatttt |
230 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
128997 |
gcttcccaatgttccttcaatcattttggttcccaatattatgttttgtgcaattgatttt |
128937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 120 - 157
Target Start/End: Complemental strand, 42471783 - 42471746
Alignment:
| Q |
120 |
tgctgcacatgaattggaaaataacaattacgattttc |
157 |
Q |
| |
|
||||||||||||||||||||||| || ||||||||||| |
|
|
| T |
42471783 |
tgctgcacatgaattggaaaataccatttacgattttc |
42471746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University