View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19475_high_80 (Length: 240)
Name: NF19475_high_80
Description: NF19475
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19475_high_80 |
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Alignment Details
Target: chr3 (Bit Score: 221; Significance: 1e-122; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 14552395 - 14552619
Alignment:
| Q |
1 |
atgtcaaatggtgctctaccgtgaagtctgatgggtgtgttattttttgtgcaaataatgtatgttatgtagtttatgggggtggtctttgattttgcag |
100 |
Q |
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| T |
14552395 |
atgtcaaatggtgctctaccgtgaagtctgatgggtgtgttattttttgtgcaaataatgtatgttatgtagtttttgggggtggtctttgattttgcag |
14552494 |
T |
|
| Q |
101 |
tatgccacatacactagatcatttattcaacaacaaagtcttgatagtaacaaaaaagcaattgatcactataaatttcttattttatcaacaacttcca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14552495 |
tatgccacatacactagatcatttattcaacaacaaagtcttgatagtaacaaaaaagcaattgatcactataaatttcttattttatcaacaacttcca |
14552594 |
T |
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| Q |
201 |
atatatagcacaatatccttgtaag |
225 |
Q |
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||||||||||||||||||||||||| |
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| T |
14552595 |
atatatagcacaatatccttgtaag |
14552619 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 117 - 212
Target Start/End: Complemental strand, 16844738 - 16844642
Alignment:
| Q |
117 |
gatcatttattcaacaacaaag-tcttgatagtaacaaaaaagcaattgatcactataaatttcttattttatcaacaacttccaatatatagcaca |
212 |
Q |
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| T |
16844738 |
gatcatttattcaacaaaaaaaatcttgaaagtaaccaaaaagcaattgatcactataaatttcttatttgttcaacaacttacaatatatagcaca |
16844642 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 50; Significance: 9e-20; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 118 - 203
Target Start/End: Original strand, 37709943 - 37710027
Alignment:
| Q |
118 |
atcatttattcaacaacaaagtcttgatagtaacaaaaaagcaattgatcactataaatttcttattttatcaacaacttccaata |
203 |
Q |
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| T |
37709943 |
atcatttattcaacaataaaatcttgaaagtaacaaaaaagcaattgatcact-ttaatttcttatttgttcaacaacttacaata |
37710027 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 118 - 203
Target Start/End: Original strand, 37531445 - 37531529
Alignment:
| Q |
118 |
atcatttattcaacaacaaagtcttgatagtaacaaaaaagcaattgatcactataaatttcttattttatcaacaacttccaata |
203 |
Q |
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|||||||||||||||| ||| |||||| |||||||||||||||||| |||||| | |||||||||||| |||||||||| ||||| |
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| T |
37531445 |
atcatttattcaacaataaaatcttgaaagtaacaaaaaagcaattaatcact-ttaatttcttatttgttcaacaacttacaata |
37531529 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 118 - 203
Target Start/End: Original strand, 37592652 - 37592736
Alignment:
| Q |
118 |
atcatttattcaacaacaaagtcttgatagtaacaaaaaagcaattgatcactataaatttcttattttatcaacaacttccaata |
203 |
Q |
| |
|
|||||||||||||||| ||| |||||| |||||||||||||||||| |||||| | |||||||||||| |||||||||| ||||| |
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| T |
37592652 |
atcatttattcaacaataaaatcttgaaagtaacaaaaaagcaattaatcact-ttaatttcttatttgttcaacaacttacaata |
37592736 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 118 - 203
Target Start/End: Original strand, 37695011 - 37695095
Alignment:
| Q |
118 |
atcatttattcaacaacaaagtcttgatagtaacaaaaaagcaattgatcactataaatttcttattttatcaacaacttccaata |
203 |
Q |
| |
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|||||||||||||||| ||| |||||| |||||||||||||||||| |||||| | |||||||||||| |||||||||| ||||| |
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| T |
37695011 |
atcatttattcaacaataaaatcttgaaagtaacaaaaaagcaattaatcact-ttaatttcttatttgttcaacaacttacaata |
37695095 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 118 - 170
Target Start/End: Original strand, 37822053 - 37822105
Alignment:
| Q |
118 |
atcatttattcaacaacaaagtcttgatagtaacaaaaaagcaattgatcact |
170 |
Q |
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|||||||||||||| | ||| || ||| ||||||||||||||||||||||||| |
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| T |
37822053 |
atcatttattcaacgataaaatcctgaaagtaacaaaaaagcaattgatcact |
37822105 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 141 - 212
Target Start/End: Complemental strand, 37394576 - 37394505
Alignment:
| Q |
141 |
ttgatagtaacaaaaaagcaattgatcactataaatttcttattttatcaacaacttccaatatatagcaca |
212 |
Q |
| |
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|||| |||| || |||||||||||||||||||||||| ||||||| ||| |||||| |||||||| |||| |
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| T |
37394576 |
ttgaaagtatcataaaagcaattgatcactataaattccttatttattcatcaacttgaaatatataacaca |
37394505 |
T |
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