View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19475_high_84 (Length: 234)
Name: NF19475_high_84
Description: NF19475
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19475_high_84 |
 | |
|
| [»] scaffold0064 (1 HSPs) |
| | |
|
| [»] scaffold0115 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0064 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: scaffold0064
Description:
Target: scaffold0064; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 12 - 219
Target Start/End: Complemental strand, 55869 - 55662
Alignment:
| Q |
12 |
atgaacctgaaatttcaatagaaagaggaagagctgcattttcaagctttctccaagagttagaattaagactatataactcagctgtccaatgcccttt |
111 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55869 |
atgaacctgaaatttcaataggaagaggaagagctgcattttcaagctttctccaagagttagaattaagactatataactcagctgtccaatgcccttt |
55770 |
T |
|
| Q |
112 |
ttgtctttcatctgttttctttagccaaatgtctcttagcacaacaactttatagtcattagttttcgggtcaaacccaaatccagcaaaatcagtgaga |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||| |
|
|
| T |
55769 |
ttgtctttcatctgttttctttagccaaatgtctcttagcacaacaactttatagtcattagttttcgggtcgagcccaaatccagcaaaatcagtgaga |
55670 |
T |
|
| Q |
212 |
gaataatt |
219 |
Q |
| |
|
|||||||| |
|
|
| T |
55669 |
gaataatt |
55662 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 98; Significance: 2e-48; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 12 - 217
Target Start/End: Complemental strand, 21087903 - 21087698
Alignment:
| Q |
12 |
atgaacctgaaatttcaatagaaagaggaagagctgcattttcaagctttctccaagagttagaattaagactatataactcagctgtccaatgcccttt |
111 |
Q |
| |
|
||||||| |||||||||| | ||||||||| | | || ||||||||| |||||||||| ||||||||||||||||||||| ||||||||| |||||| |
|
|
| T |
21087903 |
atgaaccacaaatttcaatgggaagaggaagggtttcagcatcaagctttttccaagagtttgaattaagactatataactcacctgtccaatacccttt |
21087804 |
T |
|
| Q |
112 |
ttgtctttcatctgttttctttagccaaatgtctcttagcacaacaactttatagtcattagttttcgggtcaaacccaaatccagcaaaatcagtgaga |
211 |
Q |
| |
|
||||||||||||||||| ||||| ||||| ||| | ||||||| ||||||||||||||||||||| || ||||| ||||| | |||| ||||||||||| |
|
|
| T |
21087803 |
ttgtctttcatctgtttcctttaaccaaagatctttaagcacaataactttatagtcattagttttaggatcaaaaccaaaactagcataatcagtgaga |
21087704 |
T |
|
| Q |
212 |
gaataa |
217 |
Q |
| |
|
|||||| |
|
|
| T |
21087703 |
gaataa |
21087698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0115 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: scaffold0115
Description:
Target: scaffold0115; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 12 - 217
Target Start/End: Complemental strand, 16366 - 16161
Alignment:
| Q |
12 |
atgaacctgaaatttcaatagaaagaggaagagctgcattttcaagctttctccaagagttagaattaagactatataactcagctgtccaatgcccttt |
111 |
Q |
| |
|
||||||| |||||||||| | ||||||||||| | | ||||| ||||||||||||||||| ||| |||| |||||||||||||||||| ||||| |
|
|
| T |
16366 |
atgaaccacaaatttcaatgggaagaggaagagttttagcatcaagttttctccaagagttagacttatgactgtataactcagctgtccaaaaaccttt |
16267 |
T |
|
| Q |
112 |
ttgtctttcatctgttttctttagccaaatgtctcttagcacaacaactttatagtcattagttttcgggtcaaacccaaatccagcaaaatcagtgaga |
211 |
Q |
| |
|
|||||| |||||||||| ||||| |||||| ||| | |||| ||||||||||||||||||| |||| || ||||| ||||| | |||| ||||||| ||| |
|
|
| T |
16266 |
ttgtctatcatctgtttcctttaaccaaatatctttgagcataacaactttatagtcattacttttgggatcaaaaccaaaactagcataatcagtaaga |
16167 |
T |
|
| Q |
212 |
gaataa |
217 |
Q |
| |
|
|||||| |
|
|
| T |
16166 |
gaataa |
16161 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 136 - 177
Target Start/End: Complemental strand, 26813405 - 26813364
Alignment:
| Q |
136 |
ccaaatgtctcttagcacaacaactttatagtcattagtttt |
177 |
Q |
| |
|
|||||| ||||| |||||||||| |||||||||||||||||| |
|
|
| T |
26813405 |
ccaaatatctctaagcacaacaagtttatagtcattagtttt |
26813364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 59 - 100
Target Start/End: Complemental strand, 26813491 - 26813450
Alignment:
| Q |
59 |
tttctccaagagttagaattaagactatataactcagctgtc |
100 |
Q |
| |
|
|||||||||||||| |||||||||||||||||| ||||||| |
|
|
| T |
26813491 |
tttctccaagagttggaattaagactatataacctagctgtc |
26813450 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University