View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19475_high_87 (Length: 227)

Name: NF19475_high_87
Description: NF19475
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19475_high_87
NF19475_high_87
[»] chr3 (8 HSPs)
chr3 (1-209)||(24413529-24413740)
chr3 (6-130)||(24420388-24420515)
chr3 (148-209)||(24420221-24420282)
chr3 (78-118)||(41028956-41028996)
chr3 (86-130)||(53736206-53736250)
chr3 (78-125)||(905068-905115)
chr3 (72-117)||(16790462-16790507)
chr3 (81-125)||(49587014-49587057)
[»] chr5 (6 HSPs)
chr5 (78-125)||(20982233-20982280)
chr5 (78-125)||(10391278-10391325)
chr5 (78-125)||(13224354-13224401)
chr5 (78-125)||(26516223-26516270)
chr5 (79-125)||(7096225-7096271)
chr5 (82-118)||(29588809-29588845)
[»] scaffold0590 (1 HSPs)
scaffold0590 (78-125)||(1172-1219)
[»] scaffold0275 (1 HSPs)
scaffold0275 (78-125)||(2756-2803)
[»] chr4 (8 HSPs)
chr4 (78-125)||(4191664-4191711)
chr4 (80-125)||(47970245-47970290)
chr4 (78-118)||(2980576-2980616)
chr4 (78-129)||(21157693-21157744)
chr4 (78-125)||(46415890-46415937)
chr4 (82-124)||(8130103-8130145)
chr4 (77-118)||(52645624-52645665)
chr4 (89-125)||(24160926-24160962)
[»] chr1 (7 HSPs)
chr1 (80-125)||(13037791-13037836)
chr1 (78-126)||(4202226-4202274)
chr1 (78-125)||(23370396-23370443)
chr1 (78-125)||(23373388-23373435)
chr1 (78-129)||(38651503-38651554)
chr1 (81-118)||(41638177-41638214)
chr1 (78-118)||(45975865-45975905)
[»] chr6 (8 HSPs)
chr6 (78-118)||(29249399-29249439)
chr6 (78-118)||(31668790-31668830)
chr6 (78-125)||(4247732-4247779)
chr6 (78-117)||(8010282-8010321)
chr6 (83-125)||(31461608-31461650)
chr6 (78-126)||(2727953-2728001)
chr6 (78-118)||(10452465-10452505)
chr6 (81-125)||(33259744-33259788)
[»] chr8 (5 HSPs)
chr8 (78-125)||(14482127-14482174)
chr8 (80-118)||(8536153-8536191)
chr8 (77-118)||(5290565-5290606)
chr8 (78-118)||(8629034-8629074)
chr8 (72-116)||(12972775-12972819)
[»] chr7 (8 HSPs)
chr7 (78-125)||(7244627-7244674)
chr7 (82-125)||(27481392-27481435)
chr7 (79-125)||(24973870-24973916)
chr7 (79-125)||(33894549-33894595)
chr7 (80-125)||(3610838-3610883)
chr7 (78-118)||(991995-992035)
chr7 (78-118)||(45078218-45078258)
chr7 (78-118)||(46213728-46213768)
[»] chr2 (6 HSPs)
chr2 (78-125)||(10190204-10190251)
chr2 (87-125)||(32848844-32848882)
chr2 (84-125)||(914012-914053)
chr2 (78-123)||(33197339-33197384)
chr2 (78-118)||(33267621-33267661)
chr2 (85-125)||(41033048-41033088)
[»] scaffold0654 (1 HSPs)
scaffold0654 (78-127)||(6733-6782)
[»] scaffold0014 (1 HSPs)
scaffold0014 (78-127)||(116652-116701)


Alignment Details
Target: chr3 (Bit Score: 198; Significance: 1e-108; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 24413529 - 24413740
Alignment:
Q  1 taattttatatactagaatggaattagta---caggcacatgcccactcaactttatacatagcttcgcccccgagcatgtatcatataagtgcttacgt 97  Q
    |||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24413529 taattttatatactagaatggaattagtagtgcaggcacatgcccactcaactttatacatagcttcgcccccgagcatgtatcatataagtgcttacgt 24413628  T
Q  98 atgagctatttctataacaaaggataaactaataatccattattgtactgacgaatacagggctatcatgagatcaaattgctatcataaagaaggacac 197  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24413629 atgagctatttctataacaaaggataaactaataatccattattgtactgacgaatacagggctatcatgagatcaaattgctatcataaagaaggacac 24413728  T
Q  198 caagctccttgt 209  Q
    ||||||||||||    
T  24413729 caagctccttgt 24413740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 6 - 130
Target Start/End: Complemental strand, 24420515 - 24420388
Alignment:
Q  6 ttatatactagaatggaattagta---caggcacatgcccactcaactttatacatagcttcgcccccgagcatgtatcatataagtgcttacgtatgag 102  Q
    ||||||||||||||| ||||||||   |||||||||| |||||||||||| |||||||||| |||||  |||||||| ||||||| ||||||||||| ||    
T  24420515 ttatatactagaatgaaattagtagtgcaggcacatgaccactcaactttctacatagctttgcccctaagcatgtaacatataaatgcttacgtataag 24420416  T
Q  103 ctatttctataacaaaggataaactaat 130  Q
    | ||||||||||||||||||||||||||    
T  24420415 caatttctataacaaaggataaactaat 24420388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 148 - 209
Target Start/End: Complemental strand, 24420282 - 24420221
Alignment:
Q  148 acgaatacagggctatcatgagatcaaattgctatcataaagaaggacaccaagctccttgt 209  Q
    |||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||    
T  24420282 acgaatacagggctattatgaaatcaaattgctatcataaagaaggacaccaagctccttgt 24420221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 78 - 118
Target Start/End: Complemental strand, 41028996 - 41028956
Alignment:
Q  78 tatcatataagtgcttacgtatgagctatttctataacaaa 118  Q
    ||||||||||||||||| |||| ||||||||||||||||||    
T  41028996 tatcatataagtgcttatgtataagctatttctataacaaa 41028956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 86 - 130
Target Start/End: Complemental strand, 53736250 - 53736206
Alignment:
Q  86 aagtgcttacgtatgagctatttctataacaaaggataaactaat 130  Q
    ||||||||||||||||| ||||||||||||||| |||||| ||||    
T  53736250 aagtgcttacgtatgagttatttctataacaaaagataaaataat 53736206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 78 - 125
Target Start/End: Complemental strand, 905115 - 905068
Alignment:
Q  78 tatcatataagtgcttacgtatgagctatttctataacaaaggataaa 125  Q
    ||||||||||| ||||| |||| |||||||||||||||||| ||||||    
T  905115 tatcatataagcgcttaagtataagctatttctataacaaaagataaa 905068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 72 - 117
Target Start/End: Complemental strand, 16790507 - 16790462
Alignment:
Q  72 agcatgtatcatataagtgcttacgtatgagctatttctataacaa 117  Q
    ||||| ||||||||||||||||| |||| |||||||| ||||||||    
T  16790507 agcatttatcatataagtgcttatgtataagctatttttataacaa 16790462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 81 - 125
Target Start/End: Complemental strand, 49587057 - 49587014
Alignment:
Q  81 catataagtgcttacgtatgagctatttctataacaaaggataaa 125  Q
    ||||||||||||||| ||| |||||||||||||||||| ||||||    
T  49587057 catataagtgcttac-tataagctatttctataacaaaagataaa 49587014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 78 - 125
Target Start/End: Complemental strand, 20982280 - 20982233
Alignment:
Q  78 tatcatataagtgcttacgtatgagctatttctataacaaaggataaa 125  Q
    ||||||||||||||||| |||| |||||||||||||||||||||||||    
T  20982280 tatcatataagtgcttatgtataagctatttctataacaaaggataaa 20982233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 78 - 125
Target Start/End: Original strand, 10391278 - 10391325
Alignment:
Q  78 tatcatataagtgcttacgtatgagctatttctataacaaaggataaa 125  Q
    |||||||||||||||||||||| |||||||| ||||||||| ||||||    
T  10391278 tatcatataagtgcttacgtataagctatttttataacaaaagataaa 10391325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 78 - 125
Target Start/End: Original strand, 13224354 - 13224401
Alignment:
Q  78 tatcatataagtgcttacgtatgagctatttctataacaaaggataaa 125  Q
    ||||||| ||||||||| |||| |||||||||||||||||| ||||||    
T  13224354 tatcatagaagtgcttatgtataagctatttctataacaaaagataaa 13224401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 78 - 125
Target Start/End: Original strand, 26516223 - 26516270
Alignment:
Q  78 tatcatataagtgcttacgtatgagctatttctataacaaaggataaa 125  Q
    ||||||||||||||||| |||| ||||||||||| |||||| ||||||    
T  26516223 tatcatataagtgcttatgtataagctatttctaaaacaaaagataaa 26516270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 79 - 125
Target Start/End: Complemental strand, 7096271 - 7096225
Alignment:
Q  79 atcatataagtgcttacgtatgagctatttctataacaaaggataaa 125  Q
    |||||| ||||||||| |||| |||||||||||||||||| ||||||    
T  7096271 atcatacaagtgcttatgtataagctatttctataacaaaagataaa 7096225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 82 - 118
Target Start/End: Original strand, 29588809 - 29588845
Alignment:
Q  82 atataagtgcttacgtatgagctatttctataacaaa 118  Q
    ||||||||||||| |||| ||||||||||||||||||    
T  29588809 atataagtgcttatgtataagctatttctataacaaa 29588845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0590 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0590
Description:

Target: scaffold0590; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 78 - 125
Target Start/End: Complemental strand, 1219 - 1172
Alignment:
Q  78 tatcatataagtgcttacgtatgagctatttctataacaaaggataaa 125  Q
    ||||||||||||||||| |||| |||||||||||||||||| ||||||    
T  1219 tatcatataagtgcttatgtataagctatttctataacaaaagataaa 1172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0275 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0275
Description:

Target: scaffold0275; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 78 - 125
Target Start/End: Original strand, 2756 - 2803
Alignment:
Q  78 tatcatataagtgcttacgtatgagctatttctataacaaaggataaa 125  Q
    ||||||||||||||||| |||| |||||||||||||||||| ||||||    
T  2756 tatcatataagtgcttatgtataagctatttctataacaaaagataaa 2803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 78 - 125
Target Start/End: Original strand, 4191664 - 4191711
Alignment:
Q  78 tatcatataagtgcttacgtatgagctatttctataacaaaggataaa 125  Q
    ||||||||||||||||| |||| |||||||||||||||||| ||||||    
T  4191664 tatcatataagtgcttatgtataagctatttctataacaaaagataaa 4191711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 80 - 125
Target Start/End: Original strand, 47970245 - 47970290
Alignment:
Q  80 tcatataagtgcttacgtatgagctatttctataacaaaggataaa 125  Q
    ||||||||||||||| |||| |||||||||||||||||| ||||||    
T  47970245 tcatataagtgcttatgtataagctatttctataacaaaagataaa 47970290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 78 - 118
Target Start/End: Complemental strand, 2980616 - 2980576
Alignment:
Q  78 tatcatataagtgcttacgtatgagctatttctataacaaa 118  Q
    ||||||||||||||||| |||| ||||||||||||||||||    
T  2980616 tatcatataagtgcttatgtataagctatttctataacaaa 2980576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 78 - 129
Target Start/End: Original strand, 21157693 - 21157744
Alignment:
Q  78 tatcatataagtgcttacgtatgagctatttctataacaaaggataaactaa 129  Q
    ||||||||||||||||| |||| ||||||||  ||||||||| |||||||||    
T  21157693 tatcatataagtgcttatgtatcagctattttgataacaaagtataaactaa 21157744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 78 - 125
Target Start/End: Complemental strand, 46415937 - 46415890
Alignment:
Q  78 tatcatataagtgcttacgtatgagctatttctataacaaaggataaa 125  Q
    |||||| ||||||||||||||| ||||||||| |||||||| ||||||    
T  46415937 tatcatctaagtgcttacgtataagctatttcaataacaaaagataaa 46415890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 82 - 124
Target Start/End: Original strand, 8130103 - 8130145
Alignment:
Q  82 atataagtgcttacgtatgagctatttctataacaaaggataa 124  Q
    ||||||||||||||||||||| | ||||||||||||| |||||    
T  8130103 atataagtgcttacgtatgagttctttctataacaaaagataa 8130145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 77 - 118
Target Start/End: Original strand, 52645624 - 52645665
Alignment:
Q  77 gtatcatataagtgcttacgtatgagctatttctataacaaa 118  Q
    |||||||||||||| ||| ||||||||||||||| |||||||    
T  52645624 gtatcatataagtgtttatgtatgagctatttctgtaacaaa 52645665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 89 - 125
Target Start/End: Original strand, 24160926 - 24160962
Alignment:
Q  89 tgcttacgtatgagctatttctataacaaaggataaa 125  Q
    |||||| |||| |||||||||||||||||||||||||    
T  24160926 tgcttatgtataagctatttctataacaaaggataaa 24160962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 80 - 125
Target Start/End: Original strand, 13037791 - 13037836
Alignment:
Q  80 tcatataagtgcttacgtatgagctatttctataacaaaggataaa 125  Q
    ||||||||||||||| |||| |||||||||||||||||| ||||||    
T  13037791 tcatataagtgcttatgtataagctatttctataacaaaagataaa 13037836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 78 - 126
Target Start/End: Complemental strand, 4202274 - 4202226
Alignment:
Q  78 tatcatataagtgcttacgtatgagctatttctataacaaaggataaac 126  Q
    ||||||||||||||||| |||| || ||||||||||||||| |||||||    
T  4202274 tatcatataagtgcttaagtataagttatttctataacaaaagataaac 4202226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 78 - 125
Target Start/End: Complemental strand, 23370443 - 23370396
Alignment:
Q  78 tatcatataagtgcttacgtatgagctatttctataacaaaggataaa 125  Q
    |||||||||||| ||||||||| |||||||||||| ||||| ||||||    
T  23370443 tatcatataagtacttacgtataagctatttctattacaaaagataaa 23370396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 78 - 125
Target Start/End: Complemental strand, 23373435 - 23373388
Alignment:
Q  78 tatcatataagtgcttacgtatgagctatttctataacaaaggataaa 125  Q
    |||||||||| ||||||||||| ||||||||||||| |||| ||||||    
T  23373435 tatcatataactgcttacgtattagctatttctatatcaaaagataaa 23373388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 78 - 129
Target Start/End: Complemental strand, 38651554 - 38651503
Alignment:
Q  78 tatcatataagtgcttacgtatgagctatttctataacaaaggataaactaa 129  Q
    |||||| |||||||||| |||| ||||| |||||||||||| ||||||||||    
T  38651554 tatcatgtaagtgcttatgtataagctaattctataacaaaagataaactaa 38651503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 81 - 118
Target Start/End: Original strand, 41638177 - 41638214
Alignment:
Q  81 catataagtgcttacgtatgagctatttctataacaaa 118  Q
    |||||||||||||| |||| ||||||||||||||||||    
T  41638177 catataagtgcttatgtattagctatttctataacaaa 41638214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 78 - 118
Target Start/End: Original strand, 45975865 - 45975905
Alignment:
Q  78 tatcatataagtgcttacgtatgagctatttctataacaaa 118  Q
    ||||||||||||||||||  || ||||||||||||||||||    
T  45975865 tatcatataagtgcttacacataagctatttctataacaaa 45975905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 78 - 118
Target Start/End: Original strand, 29249399 - 29249439
Alignment:
Q  78 tatcatataagtgcttacgtatgagctatttctataacaaa 118  Q
    ||||||||||||||||| |||| ||||||||||||||||||    
T  29249399 tatcatataagtgcttatgtatcagctatttctataacaaa 29249439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 78 - 118
Target Start/End: Complemental strand, 31668830 - 31668790
Alignment:
Q  78 tatcatataagtgcttacgtatgagctatttctataacaaa 118  Q
    ||||||||||||||||| |||| ||||||||||||||||||    
T  31668830 tatcatataagtgcttatgtataagctatttctataacaaa 31668790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 78 - 125
Target Start/End: Complemental strand, 4247779 - 4247732
Alignment:
Q  78 tatcatataagtgcttacgtatgagctatttctataacaaaggataaa 125  Q
    |||||| |||||||||| |||| |||||||||||||||||| ||||||    
T  4247779 tatcatgtaagtgcttatgtataagctatttctataacaaaagataaa 4247732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 78 - 117
Target Start/End: Original strand, 8010282 - 8010321
Alignment:
Q  78 tatcatataagtgcttacgtatgagctatttctataacaa 117  Q
    ||||||||||||||||| |||| |||||||||||||||||    
T  8010282 tatcatataagtgcttaggtataagctatttctataacaa 8010321  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 83 - 125
Target Start/End: Original strand, 31461608 - 31461650
Alignment:
Q  83 tataagtgcttacgtatgagctatttctataacaaaggataaa 125  Q
    |||||||||||| |||| |||||||||||||||||| ||||||    
T  31461608 tataagtgcttatgtataagctatttctataacaaaagataaa 31461650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 78 - 126
Target Start/End: Complemental strand, 2728001 - 2727953
Alignment:
Q  78 tatcatataagtgcttacgtatgagctatttctataacaaaggataaac 126  Q
    ||||||||||||||||| |||| ||||  |||||||||||| |||||||    
T  2728001 tatcatataagtgcttatgtataagctgcttctataacaaaagataaac 2727953  T

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Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 78 - 118
Target Start/End: Complemental strand, 10452505 - 10452465
Alignment:
Q  78 tatcatataagtgcttacgtatgagctatttctataacaaa 118  Q
    |||||||| |||||||| |||| ||||||||||||||||||    
T  10452505 tatcatatcagtgcttatgtataagctatttctataacaaa 10452465  T

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Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 81 - 125
Target Start/End: Original strand, 33259744 - 33259788
Alignment:
Q  81 catataagtgcttacgtatgagctatttctataacaaaggataaa 125  Q
    |||||||||||||| |||| |||||||| ||||||||| ||||||    
T  33259744 catataagtgcttatgtataagctatttttataacaaaagataaa 33259788  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 78 - 125
Target Start/End: Original strand, 14482127 - 14482174
Alignment:
Q  78 tatcatataagtgcttacgtatgagctatttctataacaaaggataaa 125  Q
    ||||||||||||||||| |||| | |||||||||||||||| ||||||    
T  14482127 tatcatataagtgcttatgtataaactatttctataacaaaagataaa 14482174  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 80 - 118
Target Start/End: Complemental strand, 8536191 - 8536153
Alignment:
Q  80 tcatataagtgcttacgtatgagctatttctataacaaa 118  Q
    ||||||||||||||| |||| ||||||||||||||||||    
T  8536191 tcatataagtgcttatgtataagctatttctataacaaa 8536153  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 77 - 118
Target Start/End: Original strand, 5290565 - 5290606
Alignment:
Q  77 gtatcatataagtgcttacgtatgagctatttctataacaaa 118  Q
    |||||||| ||||||||| |||| ||||||||||||||||||    
T  5290565 gtatcatacaagtgcttatgtataagctatttctataacaaa 5290606  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 78 - 118
Target Start/End: Original strand, 8629034 - 8629074
Alignment:
Q  78 tatcatataagtgcttacgtatgagctatttctataacaaa 118  Q
    |||||||||||||||||  ||| ||||||||||||||||||    
T  8629034 tatcatataagtgcttatttataagctatttctataacaaa 8629074  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 116
Target Start/End: Original strand, 12972775 - 12972819
Alignment:
Q  72 agcatgtatcatataagtgcttacgtatgagctatttctataaca 116  Q
    ||||| ||||||||||||||||| |||| ||||||||| ||||||    
T  12972775 agcatttatcatataagtgcttatgtataagctatttcaataaca 12972819  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 78 - 125
Target Start/End: Original strand, 7244627 - 7244674
Alignment:
Q  78 tatcatataagtgcttacgtatgagctatttctataacaaaggataaa 125  Q
    ||||||||||||||||| |||| ||||||||||||| |||| ||||||    
T  7244627 tatcatataagtgcttatgtataagctatttctatatcaaaagataaa 7244674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 82 - 125
Target Start/End: Complemental strand, 27481435 - 27481392
Alignment:
Q  82 atataagtgcttacgtatgagctatttctataacaaaggataaa 125  Q
    ||||||||| ||| |||| |||||||||||||||||||||||||    
T  27481435 atataagtgtttatgtataagctatttctataacaaaggataaa 27481392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 79 - 125
Target Start/End: Original strand, 24973870 - 24973916
Alignment:
Q  79 atcatataagtgcttacgtatgagctatttctataacaaaggataaa 125  Q
    |||||||||||||||| |||  |||||||||||||||||| ||||||    
T  24973870 atcatataagtgcttatgtaaaagctatttctataacaaaagataaa 24973916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 79 - 125
Target Start/End: Original strand, 33894549 - 33894595
Alignment:
Q  79 atcatataagtgcttacgtatgagctatttctataacaaaggataaa 125  Q
    ||||| |||||||||| |||| |||||||||||||||||| ||||||    
T  33894549 atcatgtaagtgcttatgtataagctatttctataacaaaagataaa 33894595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 80 - 125
Target Start/End: Complemental strand, 3610883 - 3610838
Alignment:
Q  80 tcatataagtgcttacgtatgagctatttctataacaaaggataaa 125  Q
    ||||||||||||||| |||| ||||||||||| |||||| ||||||    
T  3610883 tcatataagtgcttatgtataagctatttctacaacaaaagataaa 3610838  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 78 - 118
Target Start/End: Original strand, 991995 - 992035
Alignment:
Q  78 tatcatataagtgcttacgtatgagctatttctataacaaa 118  Q
    |||||||||||||||||||||| || | |||||||||||||    
T  991995 tatcatataagtgcttacgtataagttgtttctataacaaa 992035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 78 - 118
Target Start/End: Original strand, 45078218 - 45078258
Alignment:
Q  78 tatcatataagtgcttacgtatgagctatttctataacaaa 118  Q
    ||||||||||||||||| |||| |||||||| |||||||||    
T  45078218 tatcatataagtgcttatgtataagctatttttataacaaa 45078258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 78 - 118
Target Start/End: Original strand, 46213728 - 46213768
Alignment:
Q  78 tatcatataagtgcttacgtatgagctatttctataacaaa 118  Q
    ||||||||||||||||| |||  ||||||||||||||||||    
T  46213728 tatcatataagtgcttatgtaaaagctatttctataacaaa 46213768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 78 - 125
Target Start/End: Original strand, 10190204 - 10190251
Alignment:
Q  78 tatcatataagtgcttacgtatgagctatttctataacaaaggataaa 125  Q
    ||||||||||||||||| |||| | |||||| ||||||||||||||||    
T  10190204 tatcatataagtgcttatgtataaactatttttataacaaaggataaa 10190251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 87 - 125
Target Start/End: Original strand, 32848844 - 32848882
Alignment:
Q  87 agtgcttacgtatgagctatttctataacaaaggataaa 125  Q
    ||||||||||||| |||||||||||||||||| ||||||    
T  32848844 agtgcttacgtattagctatttctataacaaaagataaa 32848882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 84 - 125
Target Start/End: Original strand, 914012 - 914053
Alignment:
Q  84 ataagtgcttacgtatgagctatttctataacaaaggataaa 125  Q
    |||||| ||||||||||| |||||||||||||||| ||||||    
T  914012 ataagtacttacgtatgaactatttctataacaaaagataaa 914053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 78 - 123
Target Start/End: Complemental strand, 33197384 - 33197339
Alignment:
Q  78 tatcatataagtgcttacgtatgagctatttctataacaaaggata 123  Q
    |||||||||||||||||  ||| |||||||||||||||||| ||||    
T  33197384 tatcatataagtgcttatctataagctatttctataacaaaagata 33197339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 78 - 118
Target Start/End: Complemental strand, 33267661 - 33267621
Alignment:
Q  78 tatcatataagtgcttacgtatgagctatttctataacaaa 118  Q
    ||||||||||||||||| |||| | ||||||||||||||||    
T  33267661 tatcatataagtgcttatgtataatctatttctataacaaa 33267621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 85 - 125
Target Start/End: Complemental strand, 41033088 - 41033048
Alignment:
Q  85 taagtgcttacgtatgagctatttctataacaaaggataaa 125  Q
    |||||||||| |||| |||||||||||||||||| ||||||    
T  41033088 taagtgcttatgtataagctatttctataacaaaagataaa 41033048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0654 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0654
Description:

Target: scaffold0654; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 78 - 127
Target Start/End: Complemental strand, 6782 - 6733
Alignment:
Q  78 tatcatataagtgcttacgtatgagctatttctataacaaaggataaact 127  Q
    ||||||||||||||||| |||| | ||||||||||||||||  |||||||    
T  6782 tatcatataagtgcttatgtataaactatttctataacaaaaaataaact 6733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 78 - 127
Target Start/End: Complemental strand, 116701 - 116652
Alignment:
Q  78 tatcatataagtgcttacgtatgagctatttctataacaaaggataaact 127  Q
    ||||||||||||||||| |||| | ||||||||||||||||  |||||||    
T  116701 tatcatataagtgcttatgtataaactatttctataacaaaaaataaact 116652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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