View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19475_high_90 (Length: 216)
Name: NF19475_high_90
Description: NF19475
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19475_high_90 |
 | |
|
| [»] scaffold0475 (1 HSPs) |
| | |
|
| [»] scaffold0288 (1 HSPs) |
| | |
|
| [»] scaffold0199 (1 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 200
Target Start/End: Complemental strand, 3088222 - 3088023
Alignment:
| Q |
1 |
taaaggctttcacataacctttgtcaataccgaatacaatcacaaccgtttgcttaaatcaagaggttctaattctcttgatggtttcactgattttgtc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3088222 |
taaaggctttcacataacctttgtcaataccgaatacaatcacaaccgtttgcttaaatcaagaggttctaattctcttgatggtttcactgattttgtc |
3088123 |
T |
|
| Q |
101 |
tttgagactatccaagatggtctaactccaatggaaggtaatggtgatgttagtcaagacttggcatctctttgtcaatcagttggaaagaacttcattc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3088122 |
tttgagactatccaagatggtctaactccaatggaaggtaatggtgatgttagtcaagacttggcatctctttgtcaatcagttggaaagaacttcattc |
3088023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 85; Significance: 1e-40; HSPs: 28)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 4 - 160
Target Start/End: Original strand, 4265711 - 4265867
Alignment:
| Q |
4 |
aggctttcacataacctttgtcaataccgaatacaatcacaaccgtttgcttaaatcaagaggttctaattctcttgatggtttcactgattttgtcttt |
103 |
Q |
| |
|
|||||||||||||||||||||||| || |||||||||||||| || ||||| |||||||||||| | ||||||||||||||||||| ||| ||| ||| |
|
|
| T |
4265711 |
aggctttcacataacctttgtcaacactgaatacaatcacaaacgcttgctcaaatcaagaggtccaaattctcttgatggtttcagtgactttaagttt |
4265810 |
T |
|
| Q |
104 |
gagactatccaagatggtctaactccaatggaaggtaatggtgatgttagtcaagac |
160 |
Q |
| |
|
||||| || | |||||||||||||||||||||||| |||||||||| || ||||||| |
|
|
| T |
4265811 |
gagaccataccagatggtctaactccaatggaaggcaatggtgatgctactcaagac |
4265867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 4 - 160
Target Start/End: Complemental strand, 4517814 - 4517658
Alignment:
| Q |
4 |
aggctttcacataacctttgtcaataccgaatacaatcacaaccgtttgcttaaatcaagaggttctaattctcttgatggtttcactgattttgtcttt |
103 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||| |||||||| |||||||||||| | || | |||||||||||||||||||| |||| |
|
|
| T |
4517814 |
aggctttcacataacctttgtcaacaccgaatacaatcacaaacgtttgctcaaatcaagaggtccaaaagcctttgatggtttcactgattttaccttt |
4517715 |
T |
|
| Q |
104 |
gagactatccaagatggtctaactccaatggaaggtaatggtgatgttagtcaagac |
160 |
Q |
| |
|
|||||||| | ||||||| ||||||| || ||||| |||||||||||||||||||| |
|
|
| T |
4517714 |
gagactattccagatggtttaactccgatagaaggcgatggtgatgttagtcaagac |
4517658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 4 - 196
Target Start/End: Complemental strand, 4618775 - 4618583
Alignment:
| Q |
4 |
aggctttcacataacctttgtcaataccgaatacaatcacaaccgtttgcttaaatcaagaggttctaattctcttgatggtttcactgattttgtcttt |
103 |
Q |
| |
|
||||||||||||||||||||| || ||||||||||||||||| || ||||| |||||||||||| | || || ||||||||||||| || ||| |||| |
|
|
| T |
4618775 |
aggctttcacataacctttgttaacaccgaatacaatcacaaacgcttgctcaaatcaagaggtccaaaggcttttgatggtttcacggactttaacttt |
4618676 |
T |
|
| Q |
104 |
gagactatccaagatggtctaactccaatggaaggtaatggtgatgttagtcaagacttggcatctctttgtcaatcagttggaaagaacttc |
196 |
Q |
| |
|
|||| || | ||||||| |||| |||||||||||| ||||||||||||||||||| | || |||||||||||||||| ||||||||||| |
|
|
| T |
4618675 |
gagagcattccagatggtttaacaccaatggaaggtgatggtgatgttagtcaagatgtaccaactctttgtcaatcagtaagaaagaacttc |
4618583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 8 - 162
Target Start/End: Original strand, 4502951 - 4503105
Alignment:
| Q |
8 |
tttcacataacctttgtcaataccgaatacaatcacaaccgtttgcttaaatcaagaggttctaattctcttgatggtttcactgattttgtctttgaga |
107 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||| || ||||| |||||||||||| | ||| | |||||||||||| ||||||| |||||||| |
|
|
| T |
4502951 |
tttcacataacctttgtcaacaccgaatacaatcacaaacgcttgctcaaatcaagaggtccaaatgcctttgatggtttcaatgattttacctttgaga |
4503050 |
T |
|
| Q |
108 |
ctatccaagatggtctaactccaatggaaggtaatggtgatgttagtcaagactt |
162 |
Q |
| |
|
| || | ||||||| ||||||| |||||||| |||||||||||||||||||||| |
|
|
| T |
4503051 |
ccataccagatggtttaactccggtggaaggtgatggtgatgttagtcaagactt |
4503105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 4 - 160
Target Start/End: Complemental strand, 4575929 - 4575773
Alignment:
| Q |
4 |
aggctttcacataacctttgtcaataccgaatacaatcacaaccgtttgcttaaatcaagaggttctaattctcttgatggtttcactgattttgtcttt |
103 |
Q |
| |
|
||||||||||||||||||||| || || |||||||||||||| |||||||| |||||||||||| ||| | |||||||||||||||| ||| |||| |
|
|
| T |
4575929 |
aggctttcacataacctttgttaacactgaatacaatcacaaacgtttgctcaaatcaagaggtgaaaatgcctttgatggtttcactgactttaacttt |
4575830 |
T |
|
| Q |
104 |
gagactatccaagatggtctaactccaatggaaggtaatggtgatgttagtcaagac |
160 |
Q |
| |
|
|||||||| | ||||||| ||||||||| ||| |||||||||||||| ||||||||| |
|
|
| T |
4575829 |
gagactataccagatggtttaactccaaaggatggtaatggtgatgtaagtcaagac |
4575773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 160
Target Start/End: Original strand, 4258827 - 4258986
Alignment:
| Q |
1 |
taaaggctttcacataacctttgtcaataccgaatacaatcacaaccgtttgcttaaatcaagaggttctaattctcttgatggtttcactgattttgtc |
100 |
Q |
| |
|
|||||| |||||||||||||||||||| || ||||| |||||||| |||||||| |||||||||||| ||| | |||||||||||| ||||||| | |
|
|
| T |
4258827 |
taaaggttttcacataacctttgtcaacactgaatataatcacaaacgtttgctcaaatcaagaggtgaaaatgccgttgatggtttcattgattttacc |
4258926 |
T |
|
| Q |
101 |
tttgagactatccaagatggtctaactccaatggaaggtaatggtgatgttagtcaagac |
160 |
Q |
| |
|
||||||||||| ||||||||||| |||||| |||||||| |||| ||||||| ||||||| |
|
|
| T |
4258927 |
tttgagactattcaagatggtctgactccagtggaaggtgatggcgatgttactcaagac |
4258986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 4 - 163
Target Start/End: Complemental strand, 4507385 - 4507226
Alignment:
| Q |
4 |
aggctttcacataacctttgtcaataccgaatacaatcacaaccgtttgcttaaatcaagaggttctaattctcttgatggtttcactgattttgtcttt |
103 |
Q |
| |
|
||||||||||||||||||||| || ||||||||||||||||| || ||||| |||||||||||| ||| | |||||||||||||||||||| |||| |
|
|
| T |
4507385 |
aggctttcacataacctttgttaacaccgaatacaatcacaaacgcttgctcaaatcaagaggtgaaaatgcctttgatggtttcactgattttaacttt |
4507286 |
T |
|
| Q |
104 |
gagactatccaagatggtctaactccaatggaaggtaatggtgatgttagtcaagacttg |
163 |
Q |
| |
|
|||||| | | ||||||| ||||||||||||| ||| |||||||||||| || ||||||| |
|
|
| T |
4507285 |
gagactctaccagatggtttaactccaatggatggtgatggtgatgttaatccagacttg |
4507226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 4 - 135
Target Start/End: Original strand, 4513633 - 4513764
Alignment:
| Q |
4 |
aggctttcacataacctttgtcaataccgaatacaatcacaaccgtttgcttaaatcaagaggttctaattctcttgatggtttcactgattttgtcttt |
103 |
Q |
| |
|
||||||||||||||||||||| || ||||||||||||||||| |||||||| |||||||||||| ||||| || ||||||||||||| |||||| |||| |
|
|
| T |
4513633 |
aggctttcacataacctttgttaacaccgaatacaatcacaaacgtttgctcaaatcaagaggtcctaatgcttttgatggtttcaccgattttcgcttt |
4513732 |
T |
|
| Q |
104 |
gagactatccaagatggtctaactccaatgga |
135 |
Q |
| |
|
|||||||| | |||||| ||||||||||||| |
|
|
| T |
4513733 |
gagactattcctgatggtttaactccaatgga |
4513764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 4 - 162
Target Start/End: Complemental strand, 3173477 - 3173319
Alignment:
| Q |
4 |
aggctttcacataacctttgtcaataccgaatacaatcacaaccgtttgcttaaatcaagaggttctaattctcttgatggtttcactgattttgtcttt |
103 |
Q |
| |
|
||||||||||||||||||||| || || |||||||||||||| || ||||| ||||||| ||| | ||| | |||||||||||| ||||||| |||| |
|
|
| T |
3173477 |
aggctttcacataacctttgtaaacactgaatacaatcacaaacggttgctcaaatcaaagggtccaaatgcctttgatggtttcaatgattttaacttt |
3173378 |
T |
|
| Q |
104 |
gagactatccaagatggtctaactccaatggaaggtaatggtgatgttagtcaagactt |
162 |
Q |
| |
|
|||||||| | ||||||| ||||| ||||||||||| |||||||||||||||||||||| |
|
|
| T |
3173377 |
gagactataccagatggtttaacttcaatggaaggtgatggtgatgttagtcaagactt |
3173319 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 4 - 162
Target Start/End: Complemental strand, 4482339 - 4482181
Alignment:
| Q |
4 |
aggctttcacataacctttgtcaataccgaatacaatcacaaccgtttgcttaaatcaagaggttctaattctcttgatggtttcactgattttgtcttt |
103 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||| |||||||| |||||||| ||| | || | |||||||||||||||||||| |||| |
|
|
| T |
4482339 |
aggctttcacataacctttgtcaacaccgaatacaatcacaaacgtttgctaaaatcaaggggtccaaaagcctttgatggtttcactgattttaccttt |
4482240 |
T |
|
| Q |
104 |
gagactatccaagatggtctaactccaatggaaggtaatggtgatgttagtcaagactt |
162 |
Q |
| |
|
|| || || | ||||||| |||||||||| |||||| ||| ||| || ||||||||||| |
|
|
| T |
4482239 |
gaaacgataccagatggtttaactccaattgaaggtgatgatgaagtaagtcaagactt |
4482181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 4 - 160
Target Start/End: Complemental strand, 4581488 - 4581332
Alignment:
| Q |
4 |
aggctttcacataacctttgtcaataccgaatacaatcacaaccgtttgcttaaatcaagaggttctaattctcttgatggtttcactgattttgtcttt |
103 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||| || ||||| |||||||||||| | || | ||||||||||||| |||||| |||| |
|
|
| T |
4581488 |
aggctttcacataacctttgtcaacaccgaatacaatcacaaacgcttgctcaaatcaagaggtccaaaagcgtttgatggtttcaccgattttaccttt |
4581389 |
T |
|
| Q |
104 |
gagactatccaagatggtctaactccaatggaaggtaatggtgatgttagtcaagac |
160 |
Q |
| |
|
|||||||| | ||||||| ||||||| || ||||| || ||||||||| ||||||| |
|
|
| T |
4581388 |
gagactattccagatggtttaactccgatagaaggcgatagtgatgttaatcaagac |
4581332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 8 - 160
Target Start/End: Complemental strand, 4594480 - 4594328
Alignment:
| Q |
8 |
tttcacataacctttgtcaataccgaatacaatcacaaccgtttgcttaaatcaagaggttctaattctcttgatggtttcactgattttgtctttgaga |
107 |
Q |
| |
|
|||||||||||||||||||| || ||||||||||| || |||||||| |||||||||||| | ||| | | ||||||||| ||| |||| |||||| | |
|
|
| T |
4594480 |
tttcacataacctttgtcaacactgaatacaatcataaacgtttgctcaaatcaagaggtccaaatgccttagatggtttccctggttttagctttgaaa |
4594381 |
T |
|
| Q |
108 |
ctatccaagatggtctaactccaatggaaggtaatggtgatgttagtcaagac |
160 |
Q |
| |
|
| || | |||||||||||| |||||||||||| |||||||||||||||||||| |
|
|
| T |
4594380 |
ccataccagatggtctaacaccaatggaaggtgatggtgatgttagtcaagac |
4594328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 8 - 159
Target Start/End: Original strand, 4488855 - 4489006
Alignment:
| Q |
8 |
tttcacataacctttgtcaataccgaatacaatcacaaccgtttgcttaaatcaagaggttctaattctcttgatggtttcactgattttgtctttgaga |
107 |
Q |
| |
|
|||||||||||||||||||| || |||||||||||||| || ||||| |||||||||||| | ||| | |||||||||| ||||||||| |||||||| |
|
|
| T |
4488855 |
tttcacataacctttgtcaacactgaatacaatcacaaacgcttgctcaaatcaagaggtccaaatgcctttgatggtttaactgattttagctttgaga |
4488954 |
T |
|
| Q |
108 |
ctatccaagatggtctaactccaatggaaggtaatggtgatgttagtcaaga |
159 |
Q |
| |
|
|||| | ||||||| ||||||||| || ||| |||| |||||||||||||| |
|
|
| T |
4488955 |
ctattccagatggtttaactccaacagatggtgatggcgatgttagtcaaga |
4489006 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 8 - 159
Target Start/End: Complemental strand, 4603580 - 4603429
Alignment:
| Q |
8 |
tttcacataacctttgtcaataccgaatacaatcacaaccgtttgcttaaatcaagaggttctaattctcttgatggtttcactgattttgtctttgaga |
107 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||| |||||||| |||||||||||| ||||| | | || || |||||||||||| |||||| | |
|
|
| T |
4603580 |
tttcacataacctttgtcaacaccgaatacaatcacaaacgtttgctcaaatcaagaggtcctaatgccttagacggcttcactgattttagctttgaaa |
4603481 |
T |
|
| Q |
108 |
ctatccaagatggtctaactccaatggaaggtaatggtgatgttagtcaaga |
159 |
Q |
| |
|
| |||| |||||| ||||| || ||||||||| ||| | ||||||||||||| |
|
|
| T |
4603480 |
caatcccagatggactaacaccgatggaaggtgatgataatgttagtcaaga |
4603429 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #15
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 160
Target Start/End: Complemental strand, 4623784 - 4623625
Alignment:
| Q |
1 |
taaaggctttcacataacctttgtcaataccgaatacaatcacaaccgtttgcttaaatcaagaggttctaattctcttgatggtttcactgattttgtc |
100 |
Q |
| |
|
||||||||||||||||||||||| | ||||||||||||||||| || ||||| |||||||||||| | || | ||||||||||||| || ||| | |
|
|
| T |
4623784 |
taaaggctttcacataacctttggtcacaccgaatacaatcacaaacgcttgctcaaatcaagaggtccaaaggcctttgatggtttcacggactttaac |
4623685 |
T |
|
| Q |
101 |
tttgagactatccaagatggtctaactccaatggaaggtaatggtgatgttagtcaagac |
160 |
Q |
| |
|
|||||||| || | ||||||| |||| |||||||||||| |||||||||||||||||||| |
|
|
| T |
4623684 |
tttgagaccattccagatggtttaacaccaatggaaggtgatggtgatgttagtcaagac |
4623625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #16
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 8 - 160
Target Start/End: Complemental strand, 4587102 - 4586950
Alignment:
| Q |
8 |
tttcacataacctttgtcaataccgaatacaatcacaaccgtttgcttaaatcaagaggttctaattctcttgatggtttcactgattttgtctttgaga |
107 |
Q |
| |
|
||||||||||||||||| || || |||||||||||||| || |||||||| ||||||| | | ||| | |||||| ||| ||||||||| |||||||| |
|
|
| T |
4587102 |
tttcacataacctttgtaaacactgaatacaatcacaaacggttgcttaagtcaagagctccaaatgcctttgatgatttaactgattttagctttgaga |
4587003 |
T |
|
| Q |
108 |
ctatccaagatggtctaactccaatggaaggtaatggtgatgttagtcaagac |
160 |
Q |
| |
|
|||| | ||||||| ||||||||| ||| ||| |||||||||||||||||||| |
|
|
| T |
4587002 |
ctattccagatggtttaactccaacggatggtgatggtgatgttagtcaagac |
4586950 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #17
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 12 - 152
Target Start/End: Complemental strand, 4599629 - 4599489
Alignment:
| Q |
12 |
acataacctttgtcaataccgaatacaatcacaaccgtttgcttaaatcaagaggttctaattctcttgatggtttcactgattttgtctttgagactat |
111 |
Q |
| |
|
|||||||||| || || ||||| ||||||||||| || ||||| |||||||||||| ||||||||| | ||||||||||||||||| ||| |||||||| |
|
|
| T |
4599629 |
acataaccttcgtgaacaccgagtacaatcacaaacgcttgctcaaatcaagaggtcctaattctcgtaatggtttcactgatttttccttcgagactat |
4599530 |
T |
|
| Q |
112 |
ccaagatggtctaactccaatggaaggtaatggtgatgtta |
152 |
Q |
| |
|
| ||||||| |||||||||| || ||| |||||||||||| |
|
|
| T |
4599529 |
tccagatggtttaactccaatagatggtgatggtgatgtta |
4599489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #18
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 4 - 196
Target Start/End: Complemental strand, 4627624 - 4627432
Alignment:
| Q |
4 |
aggctttcacataacctttgtcaataccgaatacaatcacaaccgtttgcttaaatcaagaggttctaattctcttgatggtttcactgattttgtcttt |
103 |
Q |
| |
|
|||||||||||||||||||||||| || |||||||||||||| |||||||| |||||||||||| ||| | ||||||||||| ||||||| |||| |
|
|
| T |
4627624 |
aggctttcacataacctttgtcaacactgaatacaatcacaaacgtttgctcaaatcaagaggtgaaaatgcctttgatggtttcgatgattttaccttt |
4627525 |
T |
|
| Q |
104 |
gagactatccaagatggtctaactccaatggaaggtaatggtgatgttagtcaagacttggcatctctttgtcaatcagttggaaagaacttc |
196 |
Q |
| |
|
||||| || | ||||||| |||| ||| | |||||| |||| ||||||| ||||||| | ||||||||| |||||| | ||||||||||| |
|
|
| T |
4627524 |
gagaccataccagatggtttaacaccactagaaggtgatggcgatgttactcaagacataccatctctttcccaatcaataagaaagaacttc |
4627432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #19
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 4 - 160
Target Start/End: Complemental strand, 4562136 - 4561980
Alignment:
| Q |
4 |
aggctttcacataa-cctttgtcaataccgaatacaatcacaaccgtttgcttaaatcaagaggttctaattctcttgatggtttcactgattttgtctt |
102 |
Q |
| |
|
|||||||||||||| ||||||| || || |||||||||||||| |||||||| |||||||||||| ||| | |||||||||||||||| ||| ||| |
|
|
| T |
4562136 |
aggctttcacataaacctttgttaacactgaatacaatcacaaacgtttgct-aaatcaagaggtgaaaatgcctttgatggtttcactgactttaactt |
4562038 |
T |
|
| Q |
103 |
tgagactatccaagatggtctaactccaatggaaggtaatggtgatgttagtcaagac |
160 |
Q |
| |
|
||||||||| | ||||||| ||||||||| ||| ||| |||||||| ||||||||||| |
|
|
| T |
4562037 |
tgagactataccagatggtttaactccaaaggatggtgatggtgatattagtcaagac |
4561980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #20
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 4 - 159
Target Start/End: Complemental strand, 4569544 - 4569393
Alignment:
| Q |
4 |
aggctttcacataacctttgtcaataccgaatacaatcacaaccgtttgcttaaatcaagaggttctaattctcttgatggtttcactgattttgtcttt |
103 |
Q |
| |
|
|||||||||||||||||||||||| |||||| ||||||| | |||||| |||||||||||| | || | |||||||||||||||||||| |||| |
|
|
| T |
4569544 |
aggctttcacataacctttgtcaacaccgaa----atcacaaacatttgctcaaatcaagaggtccaaaagcctttgatggtttcactgattttaccttt |
4569449 |
T |
|
| Q |
104 |
gagactatccaagatggtctaactccaatggaaggtaatggtgatgttagtcaaga |
159 |
Q |
| |
|
|||||||| | ||||||| ||||||| | |||||| |||||||| |||||||||| |
|
|
| T |
4569448 |
gagactattccagatggtttaactccgacagaaggttatggtgatattagtcaaga |
4569393 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #21
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 8 - 160
Target Start/End: Complemental strand, 4558595 - 4558443
Alignment:
| Q |
8 |
tttcacataacctttgtcaataccgaatacaatcacaaccgtttgcttaaatcaagaggttctaattctcttgatggtttcactgattttgtctttgaga |
107 |
Q |
| |
|
||||||||||||| ||| || || |||||||| ||||| || ||||| || ||||||||| | ||| | |||||||||||||||||||| |||||||| |
|
|
| T |
4558595 |
tttcacataacctatgtaaacactgaatacaaccacaaacggttgctcaagtcaagaggtccaaatgcctttgatggtttcactgattttagctttgaga |
4558496 |
T |
|
| Q |
108 |
ctatccaagatggtctaactccaatggaaggtaatggtgatgttagtcaagac |
160 |
Q |
| |
|
|||| | |||||| ||||||||| ||| ||| |||| ||||||||||||||| |
|
|
| T |
4558495 |
ctattccggatggtttaactccaacggatggtgatggcgatgttagtcaagac |
4558443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #22
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 4 - 149
Target Start/End: Original strand, 4612372 - 4612517
Alignment:
| Q |
4 |
aggctttcacataacctttgtcaataccgaatacaatcacaaccgtttgcttaaatcaagaggttctaattctcttgatggtttcactgattttgtcttt |
103 |
Q |
| |
|
||||||||||||||| || ||||| ||||||||||||||||| || ||||| |||||||||||| | ||| | ||| |||||||||||||||| |||| |
|
|
| T |
4612372 |
aggctttcacataacattcgtcaacaccgaatacaatcacaaacgcttgctcaaatcaagaggtccaaatgcctttgttggtttcactgattttaccttt |
4612471 |
T |
|
| Q |
104 |
gagactatccaagatggtctaactccaatggaaggtaatggtgatg |
149 |
Q |
| |
|
||| |||| | |||||||||| || ||| ||||| ||||||||| |
|
|
| T |
4612472 |
gaggctataccagatggtctaccttcaaacgaaggcgatggtgatg |
4612517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #23
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 8 - 108
Target Start/End: Complemental strand, 4462677 - 4462577
Alignment:
| Q |
8 |
tttcacataacctttgtcaataccgaatacaatcacaaccgtttgcttaaatcaagaggttctaattctcttgatggtttcactgattttgtctttgaga |
107 |
Q |
| |
|
|||||||||||||||||||| || |||||||||||||| | ||||| || ||||||||| |||||||||| |||||||||||||| ||| |||||||| |
|
|
| T |
4462677 |
tttcacataacctttgtcaacactgaatacaatcacaattgcttgctcaattcaagaggtcctaattctctagatggtttcactgactttaactttgaga |
4462578 |
T |
|
| Q |
108 |
c |
108 |
Q |
| |
|
| |
|
|
| T |
4462577 |
c |
4462577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #24
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 4 - 108
Target Start/End: Complemental strand, 4471388 - 4471284
Alignment:
| Q |
4 |
aggctttcacataacctttgtcaataccgaatacaatcacaaccgtttgcttaaatcaagaggttctaattctcttgatggtttcactgattttgtcttt |
103 |
Q |
| |
|
||||||||||||||| |||||||| || |||||||||||||| ||||| || ||||||||| || |||||||||||||||||||||| ||| |||| |
|
|
| T |
4471388 |
aggctttcacataacgtttgtcaacactgaatacaatcacaaagccttgctcaattcaagaggtcctgattctcttgatggtttcactgactttaacttt |
4471289 |
T |
|
| Q |
104 |
gagac |
108 |
Q |
| |
|
||||| |
|
|
| T |
4471288 |
gagac |
4471284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #25
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 8 - 159
Target Start/End: Complemental strand, 4565499 - 4565348
Alignment:
| Q |
8 |
tttcacataacctttgtcaataccgaatacaatcacaaccgtttgcttaaatcaagaggttctaattctcttgatggtttcactgattttgtctttgaga |
107 |
Q |
| |
|
||||| |||||||||||||| || ||||||||||| || || ||||| |||||||||||| | ||| | | ||||||| | || |||| |||||| | |
|
|
| T |
4565499 |
tttcatataacctttgtcaacactgaatacaatcataaacgattgctaaaatcaagaggtccaaatgccttagatggttcccgtggtttttgctttgaaa |
4565400 |
T |
|
| Q |
108 |
ctatccaagatggtctaactccaatggaaggtaatggtgatgttagtcaaga |
159 |
Q |
| |
|
| || | |||||||||||| || || |||||| ||||||||||||||||||| |
|
|
| T |
4565399 |
ccataccagatggtctaacaccgatagaaggtgatggtgatgttagtcaaga |
4565348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #26
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 24 - 196
Target Start/End: Original strand, 4298172 - 4298344
Alignment:
| Q |
24 |
tcaataccgaatacaatcacaaccgtttgcttaaatcaagaggttctaattctcttgatggtttcactgattttgtctttgagactatccaagatggtct |
123 |
Q |
| |
|
|||| ||||||||||||||||| | |||| ||||||| ||| | || || ||||||||||||| | ||| |||||||||||| | ||||||||| |
|
|
| T |
4298172 |
tcaacaccgaatacaatcacaaacacctgctcgaatcaaggggtccaaaagcttttgatggtttcaccaactttagctttgagactattccagatggtct |
4298271 |
T |
|
| Q |
124 |
aactccaatggaaggtaatggtgatgttagtcaagacttggcatctctttgtcaatcagttggaaagaacttc |
196 |
Q |
| |
|
||||||| ||||||| |||| ||||||| ||||||| | ||||||||| |||||| | ||||||||||| |
|
|
| T |
4298272 |
gactccaacggaaggtgatggagatgttactcaagacataccatctctttcccaatcaatcagaaagaacttc |
4298344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #27
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 8 - 160
Target Start/End: Complemental strand, 4572436 - 4572284
Alignment:
| Q |
8 |
tttcacataacctttgtcaataccgaatacaatcacaaccgtttgcttaaatcaagaggttctaattctcttgatggtttcactgattttgtctttgaga |
107 |
Q |
| |
|
||||||||||||| ||| || || |||||||||||||| || ||||| || ||||||||| ||| | ||||||||||||| ||||| |||||||| |
|
|
| T |
4572436 |
tttcacataacctatgtaaacactgaatacaatcacaaacggttgctcaagtcaagaggtcaaaatgcctttgatggtttcaccaattttaactttgaga |
4572337 |
T |
|
| Q |
108 |
ctatccaagatggtctaactccaatggaaggtaatggtgatgttagtcaagac |
160 |
Q |
| |
|
||| | ||||||| || |||||| ||| || |||| ||||||||||||||| |
|
|
| T |
4572336 |
gtattccagatggtttatctccaacggatggcgatggcgatgttagtcaagac |
4572284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 67
Target Start/End: Original strand, 4255478 - 4255526
Alignment:
| Q |
19 |
ctttgtcaataccgaatacaatcacaaccgtttgcttaaatcaagaggt |
67 |
Q |
| |
|
||||||||| ||||||||||||||||| || ||||| ||||||||||| |
|
|
| T |
4255478 |
ctttgtcaacaccgaatacaatcacaaacgcttgctcgaatcaagaggt |
4255526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 4 - 160
Target Start/End: Complemental strand, 24104569 - 24104413
Alignment:
| Q |
4 |
aggctttcacataacctttgtcaataccgaatacaatcacaaccgtttgcttaaatcaagaggttctaattctcttgatggtttcactgattttgtcttt |
103 |
Q |
| |
|
|||||||||||||||||| || || ||||||||||||||||| || ||||| ||||||||| | ||||||||||||||||||||| ||| ||| |||| |
|
|
| T |
24104569 |
aggctttcacataaccttcgtgaacaccgaatacaatcacaaacgcttgctcgaatcaagagatcctaattctcttgatggtttcaatgactttaacttt |
24104470 |
T |
|
| Q |
104 |
gagactatccaagatggtctaactccaatggaaggtaatggtgatgttagtcaagac |
160 |
Q |
| |
|
||||| || | |||||||||||||||||||||||| ||||||||||||| ||||||| |
|
|
| T |
24104469 |
gagaccataccagatggtctaactccaatggaaggcaatggtgatgttactcaagac |
24104413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 4 - 157
Target Start/End: Complemental strand, 1282907 - 1282754
Alignment:
| Q |
4 |
aggctttcacataacctttgtcaataccgaatacaatcacaaccgtttgcttaaatcaagaggttctaattctcttgatggtttcactgattttgtcttt |
103 |
Q |
| |
|
||||||| ||||||||||||| ||||| |||||||||||||| || ||||| |||||||||||| | ||| | || |||||||||||||||||| |||| |
|
|
| T |
1282907 |
aggcttttacataacctttgttaatactgaatacaatcacaaacgcttgctcaaatcaagaggtccaaatgccctagatggtttcactgattttagcttt |
1282808 |
T |
|
| Q |
104 |
gagactatccaagatggtctaactccaatggaaggtaatggtgatgttagtcaa |
157 |
Q |
| |
|
|| || |||| |||||||||||| || | |||||| ||||||||||||||||| |
|
|
| T |
1282807 |
gaaaccatcccagatggtctaacatcactagaaggtgatggtgatgttagtcaa |
1282754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0475 (Bit Score: 66; Significance: 2e-29; HSPs: 1)
Name: scaffold0475
Description:
Target: scaffold0475; HSP #1
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 4 - 137
Target Start/End: Complemental strand, 2298 - 2165
Alignment:
| Q |
4 |
aggctttcacataacctttgtcaataccgaatacaatcacaaccgtttgcttaaatcaagaggttctaattctcttgatggtttcactgattttgtcttt |
103 |
Q |
| |
|
|||||||||||||||||||||||| || ||||||||||| || || ||||| |||||||||||| ||||| |||||||||||||| |||||||| ||| |
|
|
| T |
2298 |
aggctttcacataacctttgtcaacactgaatacaatcataaacgcttgctcaaatcaagaggtcctaatgctcttgatggtttcgctgatttttgcttc |
2199 |
T |
|
| Q |
104 |
gagactatccaagatggtctaactccaatggaag |
137 |
Q |
| |
|
|||||||| | |||||| |||||||| |||||| |
|
|
| T |
2198 |
gagactattcccgatggtttaactccagtggaag |
2165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0288 (Bit Score: 66; Significance: 2e-29; HSPs: 1)
Name: scaffold0288
Description:
Target: scaffold0288; HSP #1
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 4 - 160
Target Start/End: Original strand, 2105 - 2264
Alignment:
| Q |
4 |
aggctttcacataacctttgtcaataccgaatacaatcacaaccgtttgcttaaatcaagaggttctaattctcttgatggtttcactgattttgtcttt |
103 |
Q |
| |
|
|||||||||||||||||||||||| || ||||||||||| || || ||||| |||||||||||| ||||| |||||||||||||| |||||||| ||| |
|
|
| T |
2105 |
aggctttcacataacctttgtcaacactgaatacaatcataaacgcttgctcaaatcaagaggtcctaatgctcttgatggtttcgctgatttttgcttc |
2204 |
T |
|
| Q |
104 |
gagactatccaagatggtctaactccaatggaaggtaatggtg---atgttagtcaagac |
160 |
Q |
| |
|
|||||||| | |||||| |||||||| |||||| | ||| || |||||||||||||| |
|
|
| T |
2205 |
gagactattcccgatggtttaactccagtggaagatgatgatggtaatgttagtcaagac |
2264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0199 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: scaffold0199
Description:
Target: scaffold0199; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 15 - 157
Target Start/End: Complemental strand, 1221 - 1079
Alignment:
| Q |
15 |
taacctttgtcaataccgaatacaatcacaaccgtttgcttaaatcaagaggttctaattctcttgatggtttcactgattttgtctttgagactatcca |
114 |
Q |
| |
|
|||||| |||||| || |||||||||||||| |||||||| |||||||||||| | | | | | |||||||||||||||||| |||||| || |||| |
|
|
| T |
1221 |
taacctatgtcaacactgaatacaatcacaaacgtttgctcaaatcaagaggtccaactgccttggatggtttcactgattttagctttgaaaccatccc |
1122 |
T |
|
| Q |
115 |
agatggtctaactccaatggaaggtaatggtgatgttagtcaa |
157 |
Q |
| |
|
|||||||||||| ||| | |||||| ||||||||||||||||| |
|
|
| T |
1121 |
agatggtctaacaccactagaaggtgatggtgatgttagtcaa |
1079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 59; Significance: 4e-25; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 15 - 157
Target Start/End: Complemental strand, 1675984 - 1675842
Alignment:
| Q |
15 |
taacctttgtcaataccgaatacaatcacaaccgtttgcttaaatcaagaggttctaattctcttgatggtttcactgattttgtctttgagactatcca |
114 |
Q |
| |
|
|||||| |||||| || |||||||||||||| |||||||| |||||||||||| | | | | | |||||||||||||||||| |||||| || |||| |
|
|
| T |
1675984 |
taacctatgtcaacactgaatacaatcacaaacgtttgctcaaatcaagaggtccaactgccttggatggtttcactgattttagctttgaaaccatccc |
1675885 |
T |
|
| Q |
115 |
agatggtctaactccaatggaaggtaatggtgatgttagtcaa |
157 |
Q |
| |
|
|||||||||||| ||| | |||||| ||||||||||||||||| |
|
|
| T |
1675884 |
agatggtctaacaccactagaaggtgatggtgatgttagtcaa |
1675842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 4 - 62
Target Start/End: Original strand, 20862464 - 20862522
Alignment:
| Q |
4 |
aggctttcacataacctttgtcaataccgaatacaatcacaaccgtttgcttaaatcaa |
62 |
Q |
| |
|
||||||| ||||||| ||||||||||| |||||||||||||| || |||||||| |||| |
|
|
| T |
20862464 |
aggcttttacataacatttgtcaatactgaatacaatcacaaacgcttgcttaagtcaa |
20862522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University