View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19475_high_92 (Length: 214)
Name: NF19475_high_92
Description: NF19475
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19475_high_92 |
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Alignment Details
Target: chr2 (Bit Score: 128; Significance: 2e-66; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 128; E-Value: 2e-66
Query Start/End: Original strand, 53 - 180
Target Start/End: Complemental strand, 9522870 - 9522743
Alignment:
| Q |
53 |
cagattctgaattatctccaaataaagcattcttctgtctccttgccctatacagtaaataaaagtacacatcattttactacacattcagataaacaaa |
152 |
Q |
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| T |
9522870 |
cagattctgaattatctccaaataaagcattcttctgtctccttgccctatacagtaaataaaagtacacatcattttactacacattcagataaacaaa |
9522771 |
T |
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| Q |
153 |
aatatcatgatagaatagggtaagtgaa |
180 |
Q |
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| T |
9522770 |
aatatcatgatagaatagggtaagtgaa |
9522743 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 50 - 154
Target Start/End: Complemental strand, 20196322 - 20196218
Alignment:
| Q |
50 |
caccagattctgaattatctccaaataaagcattcttctgtctccttgccctatacagtaaataaaagtacacatcattttactacacattcagataaac |
149 |
Q |
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||||||||||| ||||||||||||||| | |||| |||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||| || |
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| T |
20196322 |
caccagattctaaattatctccaaatacaacattgttctttctccttgccctatacagtaaataaaagtacacaacattttactacacattcagatagac |
20196223 |
T |
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| Q |
150 |
aaaaa |
154 |
Q |
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||||| |
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| T |
20196222 |
aaaaa |
20196218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 9522910 - 9522881
Alignment:
| Q |
1 |
caatggtacatgatagttgaaaaagtacct |
30 |
Q |
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| T |
9522910 |
caatggtacatgatagttgaaaaagtacct |
9522881 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 52 - 116
Target Start/End: Original strand, 22514238 - 22514302
Alignment:
| Q |
52 |
ccagattctgaattatctccaaataaagcattcttctgtctccttgccctatacagtaaataaaa |
116 |
Q |
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||||||||||||||||||||| | ||||||||||| | |||||| |||| ||||||||||||| |
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| T |
22514238 |
ccagattctgaattatctccacttgcagcattcttctttttccttgacctacacagtaaataaaa |
22514302 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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