View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19475_high_94 (Length: 208)
Name: NF19475_high_94
Description: NF19475
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19475_high_94 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 150; Significance: 2e-79; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 8 - 183
Target Start/End: Complemental strand, 38934088 - 38933916
Alignment:
| Q |
8 |
gacatcatcatcataaaacaaaaatgcatacaacacttaagctaaaagcaagtataggaaaataagccaccatgaattcttaaacggaacatgtttaagc |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
38934088 |
gacatcatcatcataaaacaaaaatgcatataacacttaagctaaaagcaagtataggaaaataagccaccatgaattcttaaatggaacatgtttaagc |
38933989 |
T |
|
| Q |
108 |
taaaatgtcaaagcaattgccaacacataaacattgcaataggttaaaaaacaatgcatagtttcatggcaagcat |
183 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
38933988 |
taaaaggtcaaagcaattgccaacacataaacattgcaataggtt---aaacaatgcatagtttcatggcaagcat |
38933916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University