View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19475_low_1 (Length: 1692)
Name: NF19475_low_1
Description: NF19475
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19475_low_1 |
 | |
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Alignment Details
Target: chr7 (Bit Score: 1112; Significance: 0; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 1112; E-Value: 0
Query Start/End: Original strand, 498 - 1674
Target Start/End: Original strand, 35447991 - 35449167
Alignment:
| Q |
498 |
tatcccataatcatctacaccatcacacggaagtgttcaaattacattgtcttcacttggaggtagcaaactattaaaatatcaaagcatgtgttcatcc |
597 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35447991 |
tatcccataatcacctacaccatcacacggaagtgttcaaattacattgtcttcacttggaggtagcaaactattaaaatatcaaagcatgtgttcatcc |
35448090 |
T |
|
| Q |
598 |
atgagttatggttttatgtacaacactgttctagcattttgttaaacctgcagccaagataaacaattnnnnnnnttcgttcatgtagtaaaaactaatt |
697 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| |
|
|
| T |
35448091 |
atgagttatggttttatgtacaacactgttctagcattttgttaaacctgcagccaagataaacaattaaaaaaattcgtgcatgtagtaaaaactaatt |
35448190 |
T |
|
| Q |
698 |
aaaaactcaggtagcttaaattgcactctacatgattataccaatacaagttaccaaagctacaaaccatgctatagtaataatagaagaaccatagcaa |
797 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35448191 |
aaaaactcacgtagcttaaattgcactctacatgattataccaatacaagttaccaaagctacaaaccatgctatagtaataatagaagaaccatagcaa |
35448290 |
T |
|
| Q |
798 |
cacatatatcatgcaagtggcttcctaatttggtcctaacaatagaagtaaagaacatacctaagttaatgatgatcaaagaccgtcaactattgacttt |
897 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35448291 |
cacatatatcatgcaagtggcttcctaatttggtcctaacaatagaagtaaagaacatacctaagttaatgatgatcaaagaccgtcaactattgacttt |
35448390 |
T |
|
| Q |
898 |
ggaagtcagcatatcaggagtttcaggaatgttataaagaccaaaaggatcgtcgtcaggttcacctgttaaacaaggagatgagaatcagtactggtta |
997 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35448391 |
agaagtcagcatatcaggagtttcaggaatgttataaagaccaaaaggatcgtcgtcaggttcacctgttaaacaaggagatgagaatcagtactggtta |
35448490 |
T |
|
| Q |
998 |
tgattaatccaaaataagctttgaacattttatttaaacgcgcacattgacccacagaaacacaagagagaggacataccagaaaacagagaaacaagat |
1097 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35448491 |
tgattaatccaaactaagctttgaacattttatttaaacatgcacattgacccacagaaacacaagagagaggacataccagaaaacagagaaacaagat |
35448590 |
T |
|
| Q |
1098 |
ccggaaagctagaacaaatgtttagaaaatccataactgcttcattgtcagaatctgagttggactcgacaccagagattggcatagctgaagcatcgcg |
1197 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
35448591 |
ccggaaagctagaacaagtgtttagaaaatccataactgcttcattgtcagaatctgagttggactcgataccagagattggcatagctgaagcatcgcg |
35448690 |
T |
|
| Q |
1198 |
gacatttgagccggtctccacggcatttctatcagcaccagacatgtgaggaaaacttgaatattcaggttgtactatggccatctgcccattaactcct |
1297 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35448691 |
gacatttgagccggtctccacggcatttctatcagcaccagacatgtgaggaaaacttgaatattcaggttgtactatggccatctgcccattaactcct |
35448790 |
T |
|
| Q |
1298 |
tgctgcaaatccatgtttgagttctgactatgatgcatgcttaaaatatctccgtgagcagacatctcaaccatacgaaatgatgatccaccattattat |
1397 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| |
|
|
| T |
35448791 |
tgctgcaaatccatgtttgagttctgactatgatgcatgcttaaaatatctccgtgagcagacatctcaaccatatgaaatgatgatccaccattactat |
35448890 |
T |
|
| Q |
1398 |
agattggcatagctgatgcattcctgacaattgggcaggtctccatgacattttcatcaacaccaaacatgctaggagaagaacttggatattcaggttc |
1497 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35448891 |
agattggcatagctgatgcattcctgacaattgggcaggtctccatgacattttcatcaacaccaaacatgctaggagaagaacttggatattcaggttc |
35448990 |
T |
|
| Q |
1498 |
tgttatggccatccccccattaattccttgttgaaaacccatgttcgagttctgactataatgcatgcttgaaaaatctccatgagcagacatatcaacc |
1597 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35448991 |
tgttatggccatccccccattaattccttgttgaaaacccatgttcgagttctgactataatgcatgcttgaaaaatctccatgagcagacatatcaacc |
35449090 |
T |
|
| Q |
1598 |
atacgaaatggtgatccagtaccgttattaaagattggcgtagctgatgtattgccgacaattgggcaggcctccag |
1674 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35449091 |
atacgaaatggtgatccagtaccgttattaaagattggcgtagctgatgtattgccgacaattgggcaggcctccag |
35449167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 18 - 397
Target Start/End: Original strand, 35447511 - 35447890
Alignment:
| Q |
18 |
aagcaacaaacaacacaagatgattctgagagcttatatcacagcctggtcagggacaaaaaagagacagatcaaagcatctgacaggaagtatagaaat |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
35447511 |
aagcaacaaacaacacaagatgattctgagagcttatatcacagcctggtcagggacaaaaaagaaacagatcaaagcatctgacaggaagtatagaaat |
35447610 |
T |
|
| Q |
118 |
cgataatgacgacaatgatcacatgaattacaaaaaagtcatagctagtcctgaaaaataaagattgaatgacaataaagacttgtggctaagcggctca |
217 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
35447611 |
cgataatgacgacaatgatcgcatgaattacaaaaaagtcatagctagtcctgaaaaataaagattgaatgacaataaagacttgtggctaaggggctca |
35447710 |
T |
|
| Q |
218 |
ctcaaagagaatgcattgctttcattgaaatatattttcctgttgtgaaacatacaagtattggagggaatgcatcacttgttgtaaaggagaatacttt |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
35447711 |
ctcaaagagaatgcattgctttcattgaaatatattttcctgttgtgaaacatacaagtattggagggaatgtatcacttgttgtaaaggagaatacttt |
35447810 |
T |
|
| Q |
318 |
gatggataatatatataaagaaacatgacatcaaatgattagattttgagtactatactaataaagttatggaatatgga |
397 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35447811 |
gatggataatatatataaagtaacatgacatcaaatgattagattttgagtactatactaataaagttatggaatatgga |
35447890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1173 - 1615
Target Start/End: Original strand, 35448891 - 35449339
Alignment:
| Q |
1173 |
agattggcatagctgaagcatcgcggacatttgagccggtctccacggcatttctatcagcaccagacatgtgaggaaaa---cttgaatattcaggttg |
1269 |
Q |
| |
|
|||||||||||||||| |||| | |||| ||| || |||||||| | ||||| |||| ||||| ||||| |||| || |||| ||||||||||| |
|
|
| T |
35448891 |
agattggcatagctgatgcattcctgacaattgggcaggtctccatgacattttcatcaacaccaaacatgctaggagaagaacttggatattcaggttc |
35448990 |
T |
|
| Q |
1270 |
tactatggccatctgcccattaactccttgctgcaaatccatgtttgagttctgactatgatgcatgcttaaaatatctccgtgagcagacatctcaacc |
1369 |
Q |
| |
|
| |||||||||| |||||||| |||||| || ||| ||||||| ||||||||||||| |||||||||| ||| |||||| ||||||||||| |||||| |
|
|
| T |
35448991 |
tgttatggccatccccccattaattccttgttgaaaacccatgttcgagttctgactataatgcatgcttgaaaaatctccatgagcagacatatcaacc |
35449090 |
T |
|
| Q |
1370 |
atacgaaatgatgatcca---ccattattatagattggcatagctgatgcattcctgacaattgggcaggtctccatgacattttcatcaacaccaaaca |
1466 |
Q |
| |
|
|||||||||| ||||||| || |||||| |||||||| ||||||||| ||| | |||||||||||||| ||||| |||||||||||||| |||||||| |
|
|
| T |
35449091 |
atacgaaatggtgatccagtaccgttattaaagattggcgtagctgatgtattgccgacaattgggcaggcctccaggacattttcatcaataccaaaca |
35449190 |
T |
|
| Q |
1467 |
tgctaggagaagaacttggatattcaggttctgttatggccatccccccattaattccttgttgaaaacccatgttcgagttctgactataatgcatgct |
1566 |
Q |
| |
|
||| || |||||||||||||||||||||||||| |||||| || ||| ||||||||||||||||||| |||||||||| ||||||||||||||||||| | |
|
|
| T |
35449191 |
tgcgagtagaagaacttggatattcaggttctgatatggctattccctcattaattccttgttgaaagcccatgttcgtgttctgactataatgcatggt |
35449290 |
T |
|
| Q |
1567 |
tgaaaaatctccatgagcagacatatcaaccatacgaaatggtgatcca |
1615 |
Q |
| |
|
|||| ||||||| |||||||||| |||||||||| ||| | ||||||| |
|
|
| T |
35449291 |
tgaacaatctccttgagcagacacgtcaaccataccaaacgatgatcca |
35449339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 63; E-Value: 1e-26
Query Start/End: Original strand, 1452 - 1614
Target Start/End: Original strand, 35440925 - 35441087
Alignment:
| Q |
1452 |
catcaacaccaaacatgctaggagaagaacttggatattcaggttctgttatggccatccccccattaattccttgttgaaaacccatgttcgagttctg |
1551 |
Q |
| |
|
||||| ||||||||||| ||||||| |||||| || ||||||| | ||||| ||| |||||||||| ||||||||| | ||||||||| |||||||| |
|
|
| T |
35440925 |
catcagcaccaaacatgtgaggagaaaaacttgaattatcaggtttggatatggtcattcccccattaactccttgttgcatacccatgtttgagttctg |
35441024 |
T |
|
| Q |
1552 |
actataatgcatgcttgaaaaatctccatgagcagacatatcaaccatacgaaatggtgatcc |
1614 |
Q |
| |
|
| || || |||||||| || |||||||||||||||| |||||||||||| ||||| |||||| |
|
|
| T |
35441025 |
agtaaaagtcatgcttggaatatctccatgagcagacgtatcaaccataccaaatgatgatcc |
35441087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 49; E-Value: 3e-18
Query Start/End: Original strand, 1223 - 1386
Target Start/End: Original strand, 35440921 - 35441087
Alignment:
| Q |
1223 |
tttctatcagcaccagacatgtgagga---aaacttgaatattcaggttgtactatggccatctgcccattaactccttgctgcaaatccatgtttgagt |
1319 |
Q |
| |
|
|||| |||||||||| ||||||||||| |||||||||| ||||||| ||||| ||| ||||||||||||||| |||| | |||||||||||| |
|
|
| T |
35440921 |
tttccatcagcaccaaacatgtgaggagaaaaacttgaattatcaggtttggatatggtcattcccccattaactccttgttgcatacccatgtttgagt |
35441020 |
T |
|
| Q |
1320 |
tctgactatgatgcatgcttaaaatatctccgtgagcagacatctcaaccatacgaaatgatgatcc |
1386 |
Q |
| |
|
||||| || | ||||||| ||||||||| ||||||||| | |||||||||| |||||||||||| |
|
|
| T |
35441021 |
tctgagtaaaagtcatgcttggaatatctccatgagcagacgtatcaaccataccaaatgatgatcc |
35441087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.0000000000002
Query Start/End: Original strand, 1287 - 1395
Target Start/End: Original strand, 35449239 - 35449347
Alignment:
| Q |
1287 |
cattaactccttgctgcaaatccatgtttgagttctgactatgatgcatgcttaaaatatctccgtgagcagacatctcaaccatacgaaatgatgatcc |
1386 |
Q |
| |
|
|||||| |||||| || || ||||||| | ||||||||||| ||||||| || || |||||| |||||||||| |||||||||| ||| |||||||| |
|
|
| T |
35449239 |
cattaattccttgttgaaagcccatgttcgtgttctgactataatgcatggttgaacaatctccttgagcagacacgtcaaccataccaaacgatgatcc |
35449338 |
T |
|
| Q |
1387 |
accattatt |
1395 |
Q |
| |
|
||||||||| |
|
|
| T |
35449339 |
accattatt |
35449347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.00000000004
Query Start/End: Original strand, 1445 - 1593
Target Start/End: Original strand, 35440702 - 35440850
Alignment:
| Q |
1445 |
acattttcatcaacaccaaacatgctaggagaagaacttggatattcaggttctgttatggccatccccccattaattccttgttgaaaacccatgttcg |
1544 |
Q |
| |
|
|||||| ||| | ||||||||||| ||||||| |||||| |||| |||||| || | || |||||| ||||| ||||||||||| | ||||||||| | |
|
|
| T |
35440702 |
acatttccatgagcaccaaacatgtgaggagaataacttgaatatccaggttttgatgtgttcatcccaccattgattccttgttgcacacccatgtttg |
35440801 |
T |
|
| Q |
1545 |
agttctgactataatgcatgcttgaaaaatctccatgagcagacatatc |
1593 |
Q |
| |
|
||| ||| ||||| |||||||| || |||||| ||| || ||||||| |
|
|
| T |
35440802 |
tgttatgagtataagccatgcttggaatatctccttgaacaaacatatc |
35440850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.000000003
Query Start/End: Original strand, 1562 - 1607
Target Start/End: Original strand, 35454520 - 35454565
Alignment:
| Q |
1562 |
atgcttgaaaaatctccatgagcagacatatcaaccatacgaaatg |
1607 |
Q |
| |
|
|||||||||| |||||||||||||||| |||||||||||| ||||| |
|
|
| T |
35454520 |
atgcttgaaatatctccatgagcagacttatcaaccataccaaatg |
35454565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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