View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19475_low_10 (Length: 535)

Name: NF19475_low_10
Description: NF19475
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19475_low_10
NF19475_low_10
[»] chr1 (1 HSPs)
chr1 (18-535)||(43478718-43479244)
[»] chr7 (4 HSPs)
chr7 (440-535)||(32687971-32688059)
chr7 (169-229)||(7546163-7546223)
chr7 (95-138)||(1745184-1745227)
chr7 (169-213)||(10893865-10893909)
[»] chr4 (3 HSPs)
chr4 (169-212)||(31901273-31901316)
chr4 (85-138)||(31901264-31901317)
chr4 (102-130)||(55286732-55286760)
[»] chr2 (2 HSPs)
chr2 (184-227)||(12933354-12933397)
chr2 (39-109)||(34926883-34926954)
[»] chr6 (2 HSPs)
chr6 (100-138)||(28486797-28486835)
chr6 (100-138)||(29799210-29799248)
[»] chr3 (2 HSPs)
chr3 (179-224)||(19730215-19730260)
chr3 (179-224)||(19750805-19750850)


Alignment Details
Target: chr1 (Bit Score: 462; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 462; E-Value: 0
Query Start/End: Original strand, 18 - 535
Target Start/End: Complemental strand, 43479244 - 43478718
Alignment:
Q  18 ggaaactacaatacaagataactctgcagcacagacacttcttattgaaggcgtgtccgtgtccaatatgtgtcagcgtctgacaccaacacatgtgatc 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43479244 ggaaactacaatacaagataactctgcagcacagacacttcttattgaaggcgtgtccgtgtccaatatgtgtcagcgtctgacaccaacacatgtgatc 43479145  T
Q  118 acattcaattatgctatttttaccaatttttacttgtgtcggtgttgtcattgtccgacaccaacgcatgtgatcacattcaattatgccattttcacaa 217  Q
    ||||||||| |||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  43479144 acattcaatcatgctatttttaccaattattacttgtgtcggtgttgtcagtgtccgacaccaacgcatgtgatcacattcaattatgccattttcacaa 43479045  T
Q  218 atgattactggtctcgac--gtatagctatgtaaataacaaactatatattctaaacatacatactcagcagagtatcggtaagatgaaaaccccaaact 315  Q
    ||||||||||||||| ||  ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  43479044 atgattactggtctcaacgtgtatagctatgtaaataacaaactatatattctaaacatacatactcagcaaagtatcggtaagatgaaaaccccaaact 43478945  T
Q  316 aaatattat-------atacatcaattaaacattatattcactaactatttcaacaattaagcgaagaaaacaaataggataaagaaattgaagcgtaca 408  Q
    |||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  43478944 aaatattatatacataatacatcaattaaacattatattcactaactatttcaacaattaagcgaagaaaacaaataggataaagaaattgaagcgtata 43478845  T
Q  409 tgatgaagaaaccctaatcagtagcaataacaacacacctcagcttcatcaacatgcttccaacgactaggctcctcaccatcccaagtccgctcctcct 508  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  43478844 tgatgaagaaaccctaatcagtagcaataacaacacacctcagcttcatcaacatgcttccaacgactaggctcctcaccatcccaagtccgatcctcct 43478745  T
Q  509 ccctcgccggcgttcttccactccctc 535  Q
    |||||||||||||||||||||||||||    
T  43478744 ccctcgccggcgttcttccactccctc 43478718  T

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Target: chr7 (Bit Score: 58; Significance: 4e-24; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 440 - 535
Target Start/End: Complemental strand, 32688059 - 32687971
Alignment:
Q  440 aacacacctcagcttcatcaacatgcttccaacgactaggctcctcaccatcccaagtccgctcctcctccctcgccggcgttcttccactccctc 535  Q
    ||||||||||||||||||||||||| ||||||||| |||||       ||||||||||||| ||||||||||||||||||||||||||||||||||    
T  32688059 aacacacctcagcttcatcaacatgtttccaacgattaggc-------catcccaagtccgatcctcctccctcgccggcgttcttccactccctc 32687971  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 169 - 229
Target Start/End: Complemental strand, 7546223 - 7546163
Alignment:
Q  169 tgtccgacaccaacgcatgtgatcacattcaattatgccattttcacaaatgattactggt 229  Q
    |||||||||||||| ||| |||||||||| ||||||| ||||||  ||||| |||||||||    
T  7546223 tgtccgacaccaacccatatgatcacattgaattatgtcattttgtcaaattattactggt 7546163  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 95 - 138
Target Start/End: Complemental strand, 1745227 - 1745184
Alignment:
Q  95 gtctgacaccaacacatgtgatcacattcaattatgctattttt 138  Q
    ||||||||||||||||||||||  ||||||||||||| ||||||    
T  1745227 gtctgacaccaacacatgtgattccattcaattatgccattttt 1745184  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 169 - 213
Target Start/End: Original strand, 10893865 - 10893909
Alignment:
Q  169 tgtccgacaccaacgcatgtgatcacattcaattatgccattttc 213  Q
    |||| ||||||||| |||||||| ||||||||||||| |||||||    
T  10893865 tgtcagacaccaacacatgtgattacattcaattatgtcattttc 10893909  T

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Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 169 - 212
Target Start/End: Original strand, 31901273 - 31901316
Alignment:
Q  169 tgtccgacaccaacgcatgtgatcacattcaattatgccatttt 212  Q
    |||||||||||| | |||||||| ||||||||||||||||||||    
T  31901273 tgtccgacaccagcacatgtgattacattcaattatgccatttt 31901316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 85 - 138
Target Start/End: Original strand, 31901264 - 31901317
Alignment:
Q  85 atgtgtcagcgtctgacaccaacacatgtgatcacattcaattatgctattttt 138  Q
    ||||||| | ||| ||||||| |||||||||| |||||||||||||| ||||||    
T  31901264 atgtgtcggtgtccgacaccagcacatgtgattacattcaattatgccattttt 31901317  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 102 - 130
Target Start/End: Original strand, 55286732 - 55286760
Alignment:
Q  102 accaacacatgtgatcacattcaattatg 130  Q
    |||||||||||||||||||||||||||||    
T  55286732 accaacacatgtgatcacattcaattatg 55286760  T

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Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 184 - 227
Target Start/End: Original strand, 12933354 - 12933397
Alignment:
Q  184 catgtgatcacattcaattatgccattttcacaaatgattactg 227  Q
    |||||||| |||||||||||||||||||| |||||| |||||||    
T  12933354 catgtgattacattcaattatgccatttttacaaattattactg 12933397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 39 - 109
Target Start/End: Complemental strand, 34926954 - 34926883
Alignment:
Q  39 ctctgcagcacagacacttcttattgaaggcgtgtcc-gtgtccaatatgtgtcagcgtctgacaccaacac 109  Q
    |||| |||||| ||||||||| || |||||||||||| || ||||| |||| |||| |||||||||||||||    
T  34926954 ctctacagcaccgacacttctaatcgaaggcgtgtccagtatccaacatgtatcagtgtctgacaccaacac 34926883  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 100 - 138
Target Start/End: Original strand, 28486797 - 28486835
Alignment:
Q  100 acaccaacacatgtgatcacattcaattatgctattttt 138  Q
    |||||||||||| |||||||||||||||||| |||||||    
T  28486797 acaccaacacatttgatcacattcaattatgttattttt 28486835  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 100 - 138
Target Start/End: Original strand, 29799210 - 29799248
Alignment:
Q  100 acaccaacacatgtgatcacattcaattatgctattttt 138  Q
    |||||||||||| |||||||||||||||||| |||||||    
T  29799210 acaccaacacatttgatcacattcaattatgttattttt 29799248  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 179 - 224
Target Start/End: Original strand, 19730215 - 19730260
Alignment:
Q  179 caacgcatgtgatcacattcaattatgccattttcacaaatgatta 224  Q
    |||| |||||||||||||||||||||| ||||||| ||||| ||||    
T  19730215 caacacatgtgatcacattcaattatgtcattttctcaaattatta 19730260  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 179 - 224
Target Start/End: Original strand, 19750805 - 19750850
Alignment:
Q  179 caacgcatgtgatcacattcaattatgccattttcacaaatgatta 224  Q
    |||| |||||||||||||||||||||| ||||||| ||||| ||||    
T  19750805 caacacatgtgatcacattcaattatgtcattttctcaaattatta 19750850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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