View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19475_low_13 (Length: 516)
Name: NF19475_low_13
Description: NF19475
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19475_low_13 |
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Alignment Details
Target: chr8 (Bit Score: 303; Significance: 1e-170; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 18 - 406
Target Start/End: Complemental strand, 38933864 - 38933481
Alignment:
| Q |
18 |
ataggaaatgaattgcattgcatgcatgatgcattgctgggacagtcagtcaggaagcactcactgagcttacaagccatgccccatcctatatggaagg |
117 |
Q |
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| T |
38933864 |
ataggaaatgaattgcattgcatgcatgatgcattgctgggacagtcag----gaagcact----gagcttacaagccatgccccatcctatatggaagg |
38933773 |
T |
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| Q |
118 |
gcattgaaagaaagagaagcattgcctgtacgtgtcacaaatgaaagtgctaagcnnnnnnngatac---gaagaagagtatgtatgggtccaaacaaaa |
214 |
Q |
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| T |
38933772 |
gcattgaaagaaagaggagcattgcctgtacgtgtcacaaatgaaagggctaagctttttttgatacgaagaagaagagtatgtatgggtccacacaaaa |
38933673 |
T |
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| Q |
215 |
agccctgacatgttgcatttaattctcttttctgtttgaagctggagtgtgtacacttttctgtctttaacttagtagtactcactggttcgtaattgga |
314 |
Q |
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| T |
38933672 |
agccctgacatgttgcatttaattctcttttctgtttgaagctggagtgtgtacacttttctgtctttaacttagtagaactcactggttcgtaattgga |
38933573 |
T |
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| Q |
315 |
agctagtagcattcaattcatgcatgtaacacagaatgttataatttcaagaaattttgaccaagtaaatacaaataagtttgattttaatt |
406 |
Q |
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| T |
38933572 |
agctagtagcattcaattcatgcatgtaacacagaatgttataatttcaagaaattttgaccaagtaaatacaaataagtttgaatttaatt |
38933481 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 446 - 507
Target Start/End: Complemental strand, 38933371 - 38933310
Alignment:
| Q |
446 |
atcaagagagaagaaaagaaagtttgtttgaggtcagtagtagttcacttactgtgtgtgtg |
507 |
Q |
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| T |
38933371 |
atcaagagagaagaaaagaaagtttgtttgaggtcagtagtagttcacttactgtgtgtgtg |
38933310 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 220 - 249
Target Start/End: Complemental strand, 32670932 - 32670903
Alignment:
| Q |
220 |
tgacatgttgcatttaattctcttttctgt |
249 |
Q |
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| T |
32670932 |
tgacatgttgcatttaattctcttttctgt |
32670903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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