View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19475_low_15 (Length: 478)
Name: NF19475_low_15
Description: NF19475
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19475_low_15 |
 | |
|
| [»] scaffold0300 (1 HSPs) |
| | |
|
| [»] scaffold0074 (1 HSPs) |
| | |
|
| [»] scaffold0432 (1 HSPs) |
| | |
|
Alignment Details
Target: chr2 (Bit Score: 272; Significance: 1e-152; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 173 - 464
Target Start/End: Original strand, 12410125 - 12410416
Alignment:
| Q |
173 |
tcttgacaggtggatttggcacttgcatgcctccaacagttataatgttacaagtgtttataatcatctgttgacattcaccaataacaacttgtcggtt |
272 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
12410125 |
tcttgacaggtggatttggcacttgcatgcctccaacagttataatgttacaagtgcttataatcatctgttgacattcaccagtaacaacttgtcggtt |
12410224 |
T |
|
| Q |
273 |
actcacatgactgaaatttggaacaaggaagtgcctttgaaaatcagtctctttgcttggcgcttgttacgtgatagattacttacaacggacaatttaa |
372 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
12410225 |
actcacatgactgaaatttggaacaaggaagtgcctttgaaaatcagtctcttcgcttggcgcttgttacgtgatagattacctacaacggacaatttaa |
12410324 |
T |
|
| Q |
373 |
tcaaaagacacattttacatccgaatgttcatttctgcgtggggcgatgcggcatgatagaagatgcaaaacacttattcatctcttgtgat |
464 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
12410325 |
tcaaaagacacattttacatccgaatgttcatttctgcgtggggcgatgcggcatgatagaagaggcaaaacacttattcatctcttgtgat |
12410416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 173 - 464
Target Start/End: Original strand, 12422185 - 12422476
Alignment:
| Q |
173 |
tcttgacaggtggatttggcacttgcatgcctccaacagttataatgttacaagtgtttataatcatctgttgacattcaccaataacaacttgtcggtt |
272 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
12422185 |
tcttgacaggtggatttggcacttgcatgcctccaacagttataatgttacaagtgcttataatcatctgttgacattcaccagtaacaacttgtcggtt |
12422284 |
T |
|
| Q |
273 |
actcacatgactgaaatttggaacaaggaagtgcctttgaaaatcagtctctttgcttggcgcttgttacgtgatagattacttacaacggacaatttaa |
372 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
12422285 |
actcacatgactgaaatttggaacaaggaagtgcctttgaaaatcagtctcttcgcttggcgcttgttacgtgatagattacctacaacggacaatttaa |
12422384 |
T |
|
| Q |
373 |
tcaaaagacacattttacatccgaatgttcatttctgcgtggggcgatgcggcatgatagaagatgcaaaacacttattcatctcttgtgat |
464 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
12422385 |
tcaaaagacacattttacatccgaatgttcatttctgcgtggggcgatgcggcatgatagaagaggcaaaacacttattcatctcttgtgat |
12422476 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 173 - 464
Target Start/End: Original strand, 37647303 - 37647594
Alignment:
| Q |
173 |
tcttgacaggtggatttggcacttgcatgcctccaacagttataatgttacaagtgtttataatcatctgttgacattcaccaataacaacttgtcggtt |
272 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||| ||||||||||||||| |||||||||||||| | |
|
|
| T |
37647303 |
tcttgacaggtggatttggcacttgcatgcctccaacagttataaagttacaagtgcttataatcatttgttgacattcaccagtaacaacttgtcggct |
37647402 |
T |
|
| Q |
273 |
actcacatgactgaaatttggaacaaggaagtgcctttgaaaatcagtctctttgcttggcgcttgttacgtgatagattacttacaacggacaatttaa |
372 |
Q |
| |
|
|||||||||| |||||||||||| |||||||||||| |||||||||||||||| |||| ||||||||||| ||||||||||| ||||||||||||||||| |
|
|
| T |
37647403 |
actcacatgaatgaaatttggaaaaaggaagtgcctctgaaaatcagtctcttcgcttagcgcttgttacatgatagattacctacaacggacaatttaa |
37647502 |
T |
|
| Q |
373 |
tcaaaagacacattttacatccgaatgttcatttctgcgtggggcgatgcggcatgatagaagatgcaaaacacttattcatctcttgtgat |
464 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
37647503 |
tcaaaagacacattttacattcgaatgttcatttctgcgtggggcgatgcggcatgatcgaagatgcaaaacacttattcatctcttgtgat |
37647594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 173 - 464
Target Start/End: Original strand, 27270986 - 27271277
Alignment:
| Q |
173 |
tcttgacaggtggatttggcacttgcatgcctccaacagttataatgttacaagtgtttataatcatctgttgacattcaccaataacaacttgtcggtt |
272 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||| |||||| || ||||||| |||||||||||| ||||||||||||| |||||||||| ||| |
|
|
| T |
27270986 |
tcttgacatgtggatttggcacttgcatgcctccaaccgttatacagtcacaagtgcttataatcatctattgacattcaccagtaacaacttggtagtt |
27271085 |
T |
|
| Q |
273 |
actcacatgactgaaatttggaacaaggaagtgcctttgaaaatcagtctctttgcttggcgcttgttacgtgatagattacttacaacggacaatttaa |
372 |
Q |
| |
|
| ||||||||| ||||||||||||||||||||||| | |||||||||||||| ||| | ||||||||| ||||||||||| ||||| |||||||||| |
|
|
| T |
27271086 |
aatcacatgaccaaaatttggaacaaggaagtgcctctaaaaatcagtctcttcacttagagcttgttacatgatagattaccaacaacagacaatttaa |
27271185 |
T |
|
| Q |
373 |
tcaaaagacacattttacatccgaatgttcatttctgcgtggggcgatgcggcatgatagaagatgcaaaacacttattcatctcttgtgat |
464 |
Q |
| |
|
||||||||||||||||||||| ||||||||| || |||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
27271186 |
tcaaaagacacattttacatctgaatgttcagttatgcgtgggtggatgcggcatgatagaagatgcaaaacacttattcctctcttgtgat |
27271277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 176 - 245
Target Start/End: Original strand, 23480415 - 23480484
Alignment:
| Q |
176 |
tgacaggtggatttggcacttgcatgcctccaacagttataatgttacaagtgtttataatcatctgttg |
245 |
Q |
| |
|
|||||| ||| |||||||||| ||| | ||| |||| || ||||||||||||||||||||| || ||||| |
|
|
| T |
23480415 |
tgacagatggctttggcacttacattcttcctacagatacaatgttacaagtgtttataattatttgttg |
23480484 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 268; Significance: 1e-149; HSPs: 11)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 173 - 464
Target Start/End: Original strand, 43498635 - 43498926
Alignment:
| Q |
173 |
tcttgacaggtggatttggcacttgcatgcctccaacagttataatgttacaagtgtttataatcatctgttgacattcaccaataacaacttgtcggtt |
272 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
43498635 |
tcttgacaggtggatttggcacttgcatgcctccaacagttataatgttacaagtgcttataatcatctgttgacattcaccagtaacaacttgtcggtt |
43498734 |
T |
|
| Q |
273 |
actcacatgactgaaatttggaacaaggaagtgcctttgaaaatcagtctctttgcttggcgcttgttacgtgatagattacttacaacggacaatttaa |
372 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||| ||||||||||||||||| |
|
|
| T |
43498735 |
actcacatgactgaaatttggaacaaggaagtgcctttgaaaatcagtctcttcgcttggcgcttattacgtgatagattacctacaacggacaatttaa |
43498834 |
T |
|
| Q |
373 |
tcaaaagacacattttacatccgaatgttcatttctgcgtggggcgatgcggcatgatagaagatgcaaaacacttattcatctcttgtgat |
464 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43498835 |
tcaaaagacacattttacatccgaatgttcatttttgcgtggggcgatgcggcatgatagaagatgcaaaacacttattcatctcttgtgat |
43498926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 176 - 408
Target Start/End: Complemental strand, 36652452 - 36652220
Alignment:
| Q |
176 |
tgacaggtggatttggcacttgcatgcctccaacagttataatgttacaagtgtttataatcatctgttgacattcaccaataacaacttgtcggttact |
275 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||| ||||||||||||||| |||||||||| ||||||| |
|
|
| T |
36652452 |
tgacaggtggatttggcacttgcatgcctccaacagttataaagttacaagtgcttataatcatatgttgacattcaccagtaacaacttggtggttact |
36652353 |
T |
|
| Q |
276 |
cacatgactgaaatttggaacaaggaagtgcctttgaaaatcagtctctttgcttggcgcttgttacgtgatagattacttacaacggacaatttaatca |
375 |
Q |
| |
|
|| |||||||||||||||||||||||||||||| |||||||||||||||| |||| |||||||||||||||||||||| ||||||||| |||||||||| |
|
|
| T |
36652352 |
cagatgactgaaatttggaacaaggaagtgcctctgaaaatcagtctcttcgcttagcgcttgttacgtgatagattaactacaacggaaaatttaatca |
36652253 |
T |
|
| Q |
376 |
aaagacacattttacatccgaatgttcatttct |
408 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
36652252 |
aaagacacattttacatccgaatgttcatttct |
36652220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 165; E-Value: 5e-88
Query Start/End: Original strand, 176 - 464
Target Start/End: Complemental strand, 39060479 - 39060192
Alignment:
| Q |
176 |
tgacaggtggatttggcacttgcatgcctccaacagttataatgttacaagtgtttataatcatctgttgacattcaccaataacaacttgtcggttact |
275 |
Q |
| |
|
||||||||||||||||| |||||||||||| ||| ||||||| | |||||| |||||||||||| ||||||||| ||| |||||| ||| ||||||| |
|
|
| T |
39060479 |
tgacaggtggatttggcgcttgcatgcctcaaactgttataacatcgcaagtgcttataatcatctattgacattcgccagtaacaatttggcggttaca |
39060380 |
T |
|
| Q |
276 |
cacatgactgaaatttggaacaaggaagtgcctttgaaaatcagtctctttgcttggcgcttgttacgtgatagattacttacaacggacaatttaatca |
375 |
Q |
| |
|
||||||||||||||||| || |||||||||||| |||||||||| ||||| ||||| |||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
39060379 |
cacatgactgaaatttgaaataaggaagtgcctctgaaaatcagcctcttcgcttgccgcttgttacgtgatagattaccaacaacggacaatttaatca |
39060280 |
T |
|
| Q |
376 |
aaagacacattttacatccgaatgttcatttctgcgtggggcgatgcggcatgatagaagatgcaaaacacttattcatctcttgtgat |
464 |
Q |
| |
|
||||||||||||||||||||||||| ||||| ||||||| ||| ||||||||||| ||||||||||||||||||| ||||||||||| |
|
|
| T |
39060279 |
aaagacacattttacatccgaatgtgcatttatgcgtggctggatccggcatgatag-agatgcaaaacacttattcctctcttgtgat |
39060192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 176 - 464
Target Start/End: Complemental strand, 37871418 - 37871130
Alignment:
| Q |
176 |
tgacaggtggatttggcacttgcatgcctccaacagttataatgttacaagtgtttataatcatctgttgacattcaccaataacaacttgtcggttact |
275 |
Q |
| |
|
||||||||||||||||||||| |||||||||| |||||||||||| ||||||| |||||| ||| ||||||||| | || |||||||||| |||||||| |
|
|
| T |
37871418 |
tgacaggtggatttggcacttacatgcctccagcagttataatgtcacaagtgcttataaccatatgttgacatcaaacagtaacaacttggcggttact |
37871319 |
T |
|
| Q |
276 |
cacatgactgaaatttggaacaaggaagtgcctttgaaaatcagtctctttgcttggcgcttgttacgtgatagattacttacaacggacaatttaatca |
375 |
Q |
| |
|
||||| |||||||||| ||||||||||||||| |||||||||| ||||| |||||||||||||||| ||||||||||| ||||| |||||| |||||| |
|
|
| T |
37871318 |
cacattactgaaatttagaacaaggaagtgcccctgaaaatcagcctcttcgcttggcgcttgttacatgatagattaccaacaacagacaatctaatca |
37871219 |
T |
|
| Q |
376 |
aaagacacattttacatccgaatgttcatttctgcgtggggcgatgcggcatgatagaagatgcaaaacacttattcatctcttgtgat |
464 |
Q |
| |
|
|||||||||||||||||||||||| ||| || ||||||| |||| || | ||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
37871218 |
aaagacacattttacatccgaatgctcagttatgcgtggatggatgtggtacgatagaagatgcaaaacacttattcctctcttgtgat |
37871130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 176 - 461
Target Start/End: Complemental strand, 9897269 - 9896979
Alignment:
| Q |
176 |
tgacaggtggatttggcacttgcatgcctccaacagttataatgttacaagtgtttataatcatctgttgacattcaccaataacaacttgtcggttact |
275 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||| | ||||||| ||||||||||||||||||||||||| |||||||||| ||||||| |
|
|
| T |
9897269 |
tgacaggtggatttggcacttgcatgtctccaacagttataacatcacaagtgcttataatcatctgttgacattcaccggtaacaacttggcggttaca |
9897170 |
T |
|
| Q |
276 |
cacatgactgaaatttggaacaaggaagtgcctttgaaaatcagtctctttgcttggcgcttgttacgtgatagatt-----acttacaacggacaattt |
370 |
Q |
| |
|
||||||| ||||||||| ||||||||||||||| | |||||||| ||||| |||| |||||| ||||||||||||| || |||||||||||||| |
|
|
| T |
9897169 |
cacatgattgaaatttgaaacaaggaagtgcctctaaaaatcagcctcttcacttgacgcttgctacgtgatagatttaatcaccaacaacggacaattt |
9897070 |
T |
|
| Q |
371 |
aatcaaaagacacattttacatccgaatgttcatttctgcgtggggcgatgcggcatgatagaagatgcaaaacacttattcatctcttgt |
461 |
Q |
| |
|
||||||||||||||||||||||| ||||| ||||| || |||| ||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
9897069 |
aatcaaaagacacattttacatctgaatgcacatttatgtgtggttggatgcggcatgatagaagatgcaaaacacttattcctctcttgt |
9896979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 153; E-Value: 7e-81
Query Start/End: Original strand, 176 - 464
Target Start/End: Complemental strand, 23108544 - 23108256
Alignment:
| Q |
176 |
tgacaggtggatttggcacttgcatgcctccaacagttataatgttacaagtgtttataatcatctgttgacattcaccaataacaacttgtcggttact |
275 |
Q |
| |
|
||||||||||||||||| ||| ||| |||||| ||||||| |||| ||||||| |||||| ||| ||||||||| |||| |||||||||| |||||||| |
|
|
| T |
23108544 |
tgacaggtggatttggctcttacattcctccagcagttatgatgtcacaagtgcttataaccatatgttgacatcaaccagtaacaacttggcggttact |
23108445 |
T |
|
| Q |
276 |
cacatgactgaaatttggaacaaggaagtgcctttgaaaatcagtctctttgcttggcgcttgttacgtgatagattacttacaacggacaatttaatca |
375 |
Q |
| |
|
||||| |||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||| ||||| ||||||||||||| |
|
|
| T |
23108444 |
cacattactgaaatttggaacaaggaagtgcccctgaaaatcagtctcttcgcttggcgcttgttacgtgatagattaccaacaacagacaatttaatca |
23108345 |
T |
|
| Q |
376 |
aaagacacattttacatccgaatgttcatttctgcgtggggcgatgcggcatgatagaagatgcaaaacacttattcatctcttgtgat |
464 |
Q |
| |
|
|||||||||||||||||| || || ||| || |||||| ||||||| | |||| |||||||||| ||||||||| ||||||||||| |
|
|
| T |
23108344 |
aaagacacattttacatctgagtgctcagttatgcgtgaatggatgcggtacgataaaagatgcaaagcacttattcctctcttgtgat |
23108256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 179 - 464
Target Start/End: Original strand, 48640068 - 48640353
Alignment:
| Q |
179 |
caggtggatttggcacttgcatgcctccaacagttataatgttacaagtgtttataatcatctgttgacattcaccaataacaacttgtcggttactcac |
278 |
Q |
| |
|
|||||||||||||||||| ||||| |||| || |||||| || ||||||| |||||| |||||||| ||| |||| ||||||||||| | |||||| |
|
|
| T |
48640068 |
caggtggatttggcacttacatgcttccagcaattataacgtcacaagtgcttataaccatctgttaacaccaaccagcaacaacttgtcagcaactcac |
48640167 |
T |
|
| Q |
279 |
atgactgaaatttggaacaaggaagtgcctttgaaaatcagtctctttgcttggcgcttgttacgtgatagattacttacaacggacaatttaatcaaaa |
378 |
Q |
| |
|
| | | ||||| ||||||| |||||| || ||||||| ||||||||||||||||| |||| || |||||||||| ||||| |||||| |||| |||| |
|
|
| T |
48640168 |
acgtcagaaatctggaacatggaagttcccctgaaaattagtctctttgcttggcgtctgttgcgggatagattaccaacaacagacaatctaattaaaa |
48640267 |
T |
|
| Q |
379 |
gacacattttacatccgaatgttcatttctgcgtggggcgatgcggcatgatagaagatgcaaaacacttattcatctcttgtgat |
464 |
Q |
| |
|
| |||||||||| ||| |||| ||| || |||||||| ||||||| ||||| || |||||||||||||||||| ||||||||||| |
|
|
| T |
48640268 |
ggcacattttacttccaaatgctcagttatgcgtgggtggatgcggtatgatggaggatgcaaaacacttattcctctcttgtgat |
48640353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 176 - 464
Target Start/End: Complemental strand, 47591224 - 47590936
Alignment:
| Q |
176 |
tgacaggtggatttggcacttgcatgcctccaacagttataatgttacaagtgtttataatcatctgttgacattcaccaataacaacttgtcggttact |
275 |
Q |
| |
|
||||||||||||||| ||||| ||||| ||||||| |||||| || ||||||| |||||| |||||||| ||| | || ||||||||||| ||| |
|
|
| T |
47591224 |
tgacaggtggatttgacacttacatgcttccaacaattataacgtcacaagtgcttataaccatctgttaacaccaatcagcaacaacttgtcaacaact |
47591125 |
T |
|
| Q |
276 |
cacatgactgaaatttggaacaaggaagtgcctttgaaaatcagtctctttgcttggcgcttgttacgtgatagattacttacaacggacaatttaatca |
375 |
Q |
| |
|
|||| | ||||| | ||||||||||||||| ||||||| |||||||||||||||| |||| || |||||||||| |||||| ||||| |||| | |
|
|
| T |
47591124 |
cacacgttagaaatcttgaacaaggaagtgcccctgaaaattagtctctttgcttggcttctgttgcgggatagattaccaacaacgaacaatctaatta |
47591025 |
T |
|
| Q |
376 |
aaagacacattttacatccgaatgttcatttctgcgtggggcgatgcggcatgatagaagatgcaaaacacttattcatctcttgtgat |
464 |
Q |
| |
|
||||||||||||||| ||| |||| ||| || |||||||| |||||| |||||| || |||||||||||||||||| ||||||||||| |
|
|
| T |
47591024 |
aaagacacattttacttccaaatgctcagttatgcgtgggtggatgcgacatgatggaggatgcaaaacacttattcctctcttgtgat |
47590936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 186 - 464
Target Start/End: Complemental strand, 30598988 - 30598710
Alignment:
| Q |
186 |
atttggcacttgcatgcctccaacagttataatgttacaagtgtttataatcatctgttgacattcaccaataacaacttgtcggttactcacatgactg |
285 |
Q |
| |
|
|||||||| || ||||| ||||||| ||||| || ||||||| |||||| || ||||| ||| || |||||||||||| | | | |||||| |||| |
|
|
| T |
30598988 |
atttggcatttacatgcatccaacaaatataacgtcacaagtgcttataaccacttgttgtcatcaacaaataacaacttggcagctgatcacataactg |
30598889 |
T |
|
| Q |
286 |
aaatttggaacaaggaagtgcctttgaaaatcagtctctttgcttggcgcttgttacgtgatagattacttacaacggacaatttaatcaaaagacacat |
385 |
Q |
| |
|
||||||| || |||||||||||||| ||| ||||||||||||| ||||| || | ||| ||||||||| ||||| | ||||||| | |||||| | || |
|
|
| T |
30598888 |
aaatttgaaataaggaagtgcctttaaaagtcagtctctttgcatggcgtctgcttcgtaatagattaccaacaactggcaatttagttaaaagataaat |
30598789 |
T |
|
| Q |
386 |
tttacatccgaatgttcatttctgcgtggggcgatgcggcatgatagaagatgcaaaacacttattcatctcttgtgat |
464 |
Q |
| |
|
| |||| || |||| ||| | || ||||| |||| |||||| ||||||||||| ||||||||||| ||||||||||| |
|
|
| T |
30598788 |
tatacaaccaaatgctcaagtttgtgtgggtagatgtggcatgttagaagatgcataacacttattcttctcttgtgat |
30598710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 387 - 464
Target Start/End: Original strand, 7743124 - 7743201
Alignment:
| Q |
387 |
ttacatccgaatgttcatttctgcgtggggcgatgcggcatgatagaagatgcaaaacacttattcatctcttgtgat |
464 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
7743124 |
ttacatccgaatattcatttctgcgtggggcgatgcggtatgatagaagatgtaaaacacttattcatctcttgtgat |
7743201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 375 - 464
Target Start/End: Original strand, 56024575 - 56024664
Alignment:
| Q |
375 |
aaaagacacattttacatccgaatgttcatttctgcgtggggcgatgcggcatgatagaagatgcaaaacacttattcatctcttgtgat |
464 |
Q |
| |
|
|||||||||||||||| | | |||| ||| || ||||| || ||||||| ||||| || ||||||||| |||||||| |||||| |||| |
|
|
| T |
56024575 |
aaaagacacattttactttcaaatgctcagttttgcgtaggtggatgcggtatgatggaggatgcaaaatacttattcctctcttttgat |
56024664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0300 (Bit Score: 233; Significance: 1e-128; HSPs: 1)
Name: scaffold0300
Description:
Target: scaffold0300; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 176 - 464
Target Start/End: Original strand, 8918 - 9206
Alignment:
| Q |
176 |
tgacaggtggatttggcacttgcatgcctccaacagttataatgttacaagtgtttataatcatctgttgacattcaccaataacaacttgtcggttact |
275 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| |||||| |||||||||| |||||||| |
|
|
| T |
8918 |
tgacaggtggatttggcacttgcatgcctccaacagttataaaattacaagtgcttataatcatctgttgacaatcaccagtaacaacttggcggttact |
9017 |
T |
|
| Q |
276 |
cacatgactgaaatttggaacaaggaagtgcctttgaaaatcagtctctttgcttggcgcttgttacgtgatagattacttacaacggacaatttaatca |
375 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
9018 |
cacatgactgaaatttggaacaaggaagtgcctctgaaaatcagtctcttcgcttggcgcttgttacgtgatagattacctacaacggacaatttaatca |
9117 |
T |
|
| Q |
376 |
aaagacacattttacatccgaatgttcatttctgcgtggggcgatgcggcatgatagaagatgcaaaacacttattcatctcttgtgat |
464 |
Q |
| |
|
|||||||||||||||||| |||||||||||| ||||||||| |||||||||||||||||||||||||||| |||||| ||||||||||| |
|
|
| T |
9118 |
aaagacacattttacatctgaatgttcatttttgcgtggggggatgcggcatgatagaagatgcaaaacatttattcctctcttgtgat |
9206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 205; Significance: 1e-112; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 176 - 464
Target Start/End: Complemental strand, 8445020 - 8444732
Alignment:
| Q |
176 |
tgacaggtggatttggcacttgcatgcctccaacagttataatgttacaagtgtttataatcatctgttgacattcaccaataacaacttgtcggttact |
275 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||| | ||| |||||| |||||||| |
|
|
| T |
8445020 |
tgacaggtggatttggcacttgcatgcctccaacagttataaagttacaagtgcttataatcatctgttgacattcactagtaataacttggcggttact |
8444921 |
T |
|
| Q |
276 |
cacatgactgaaatttggaacaaggaagtgcctttgaaaatcagtctctttgcttggcgcttgttacgtgatagattacttacaacggacaatttaatca |
375 |
Q |
| |
|
||||||||||||||||||||||||||||||| | | |||| ||||||||| |||||| ||||||||||||||||||||| |||||| ||||||||||||| |
|
|
| T |
8444920 |
cacatgactgaaatttggaacaaggaagtgcttctaaaaaccagtctcttcgcttggtgcttgttacgtgatagattacctacaacagacaatttaatca |
8444821 |
T |
|
| Q |
376 |
aaagacacattttacatccgaatgttcatttctgcgtggggcgatgcggcatgatagaagatgcaaaacacttattcatctcttgtgat |
464 |
Q |
| |
|
|||||| ||||||||||| |||||||||||| ||| ||||| |||| |||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
8444820 |
aaagacgcattttacatctgaatgttcatttatgcatggggggatggggcatgatagaagatgcaaaacacttattcctctcttgtgat |
8444732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 173; E-Value: 8e-93
Query Start/End: Original strand, 176 - 464
Target Start/End: Complemental strand, 13090546 - 13090258
Alignment:
| Q |
176 |
tgacaggtggatttggcacttgcatgcctccaacagttataatgttacaagtgtttataatcatctgttgacattcaccaataacaacttgtcggttact |
275 |
Q |
| |
|
||||||||||||||||||||| |||||||||| |||||||||||| |||||| |||||| ||| ||||||||| | || |||||||||| |||||||| |
|
|
| T |
13090546 |
tgacaggtggatttggcacttacatgcctccagcagttataatgtctcaagtgcttataaccatatgttgacatcaaacagtaacaacttggcggttact |
13090447 |
T |
|
| Q |
276 |
cacatgactgaaatttggaacaaggaagtgcctttgaaaatcagtctctttgcttggcgcttgttacgtgatagattacttacaacggacaatttaatca |
375 |
Q |
| |
|
||||| |||||||||||||||||||||||||| ||||||||||| ||||| |||||||||||||||||||||||||||| |||||| ||||| |||||| |
|
|
| T |
13090446 |
cacattactgaaatttggaacaaggaagtgcccttgaaaatcagcctcttcgcttggcgcttgttacgtgatagattaccaacaacgaacaatctaatca |
13090347 |
T |
|
| Q |
376 |
aaagacacattttacatccgaatgttcatttctgcgtggggcgatgcggcatgatagaagatgcaaaacacttattcatctcttgtgat |
464 |
Q |
| |
|
|||||||||||||||||||||||| ||| || |||||||| | ||||| | ||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
13090346 |
aaagacacattttacatccgaatgctcagttatgcgtgggtggttgcggtacgatagaagatgcaaaacacttattcctctcttgtgat |
13090258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 193 - 464
Target Start/End: Complemental strand, 4035043 - 4034772
Alignment:
| Q |
193 |
acttgcatgcctccaacagttataatgttacaagtgtttataatcatctgttgacattcaccaataacaacttgtcggttactcacatgactgaaatttg |
292 |
Q |
| |
|
|||| ||||||||||||||||||||||| |||||| |||||| ||| ||||||||| | | |||||||||| ||||||||||||| ||||||||||| |
|
|
| T |
4035043 |
acttacatgcctccaacagttataatgtctcaagtgcttataaccatatgttgacatcaaatagtaacaacttggcggttactcacattactgaaatttg |
4034944 |
T |
|
| Q |
293 |
gaacaaggaagtgcctttgaaaatcagtctctttgcttggcgcttgttacgtgatagattacttacaacggacaatttaatcaaaagacacattttacat |
392 |
Q |
| |
|
||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||| |
|
|
| T |
4034943 |
gaacaaggaagtgcccctgaaaatcagtctcttcgcttggcgcttgttacgtgatagattaccaacaacggacaatctaatcaaaagacacattttacat |
4034844 |
T |
|
| Q |
393 |
ccgaatgttcatttctgcgtggggcgatgcggcatgatagaagatgcaaaacacttattcatctcttgtgat |
464 |
Q |
| |
|
| ||||| ||| || |||||||| ||| ||| | |||||||||||| |||||||||||| ||||||||||| |
|
|
| T |
4034843 |
ctgaatgctcagttatgcgtgggtggatacggtacgatagaagatgcgaaacacttattcctctcttgtgat |
4034772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 304 - 464
Target Start/End: Original strand, 24503523 - 24503683
Alignment:
| Q |
304 |
tgcctttgaaaatcagtctctttgcttggcgcttgttacgtgatagattacttacaacggacaatttaatcaaaagacacattttacatccgaatgttca |
403 |
Q |
| |
|
||||||| |||||||||||||| |||||||||||||||| ||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24503523 |
tgcctttaaaaatcagtctcttcgcttggcgcttgttacatgatagattacctacaacggataatttaatcaaaagacacattttacatccgaatgttca |
24503622 |
T |
|
| Q |
404 |
tttctgcgtggggcgatgcggcatgatagaagatgcaaaacacttattcatctcttgtgat |
464 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24503623 |
tttctgcgtggggcgatgcggcatgatagaagatgcaaaacacttattcatctcttgtgat |
24503683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 136; E-Value: 9e-71
Query Start/End: Original strand, 233 - 464
Target Start/End: Original strand, 45539713 - 45539944
Alignment:
| Q |
233 |
taatcatctgttgacattcaccaataacaacttgtcggttactcacatgactgaaatttggaacaaggaagtgcctttgaaaatcagtctctttgcttgg |
332 |
Q |
| |
|
||||||| ||||||||||||||| || |||||| |||||||||||||| ||||||||||||||||||||||||| ||||| |||| ||||| |||| |
|
|
| T |
45539713 |
taatcatttgttgacattcaccagtagtaacttggtggttactcacatgattgaaatttggaacaaggaagtgcctctgaaagtcagcctcttcacttga |
45539812 |
T |
|
| Q |
333 |
cgcttgttacgtgatagattacttacaacggacaatttaatcaaaagacacattttacatccgaatgttcatttctgcgtggggcgatgcggcatgatag |
432 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||| ||||||||| |||||||||||||||||| |||||| |||||||| |||||||||||||| |
|
|
| T |
45539813 |
cgcttgttacgtgatagattaccaacaacggacaatttcatcaaaagagacattttacatccgaatgctcatttatgcgtgggtgcatgcggcatgatag |
45539912 |
T |
|
| Q |
433 |
aagatgcaaaacacttattcatctcttgtgat |
464 |
Q |
| |
|
|||||| ||||||||||||| ||||||||||| |
|
|
| T |
45539913 |
aagatgaaaaacacttattcctctcttgtgat |
45539944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 176 - 464
Target Start/End: Complemental strand, 9932865 - 9932577
Alignment:
| Q |
176 |
tgacaggtggatttggcacttgcatgcctccaacagttataatgttacaagtgtttataatcatctgttgacattcaccaataacaacttgtcggttact |
275 |
Q |
| |
|
||||||||||||||||||||| ||||| ||||||| ||||||||| ||||||| |||||| |||||||| ||| || ||||||||||| | ||| |
|
|
| T |
9932865 |
tgacaggtggatttggcacttacatgcttccaacaattataatgtcacaagtgcttataaccatctgttaacaccattcagcaacaacttgtcagcaact |
9932766 |
T |
|
| Q |
276 |
cacatgactgaaatttggaacaaggaagtgcctttgaaaatcagtctctttgcttggcgcttgttacgtgatagattacttacaacggacaatttaatca |
375 |
Q |
| |
|
|||| | | |||||||||||||||||||| || ||||||| |||||||||||||||||| |||| || |||||||||| |||||||||||| |||| | |
|
|
| T |
9932765 |
cacacgtcagaaatttggaacaaggaagttcccctgaaaattagtctctttgcttggcgcctgttgcgggatagattaccaacaacggacaatctaatta |
9932666 |
T |
|
| Q |
376 |
aaagacacattttacatccgaatgttcatttctgcgtggggcgatgcggcatgatagaagatgcaaaacacttattcatctcttgtgat |
464 |
Q |
| |
|
||||||||||||||| ||| ||| ||| || |||||||| ||||||| ||| | || ||||||||||| |||||| |||| |||||| |
|
|
| T |
9932665 |
aaagacacattttacttccatatgctcagttatgcgtgggtggatgcggtatgctggaggatgcaaaacatttattcctctcctgtgat |
9932577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 176 - 236
Target Start/End: Original strand, 15728805 - 15728865
Alignment:
| Q |
176 |
tgacaggtggatttggcacttgcatgcctccaacagttataatgttacaagtgtttataat |
236 |
Q |
| |
|
||||| |||||||||||| |||||||| ||||||| ||||||||| ||||||| ||||||| |
|
|
| T |
15728805 |
tgacaagtggatttggcatttgcatgcttccaacaattataatgtcacaagtgcttataat |
15728865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 171; Significance: 1e-91; HSPs: 12)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 176 - 461
Target Start/End: Original strand, 1031565 - 1031850
Alignment:
| Q |
176 |
tgacaggtggatttggcacttgcatgcctccaacagttataatgttacaagtgtttataatcatctgttgacattcaccaataacaacttgtcggttact |
275 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||| || ||||||| |||||||| ||||||||||||||||| |||||||||| ||||||| |
|
|
| T |
1031565 |
tgacaggtggatttggcacttgcatgcctcccacagttataaagtcacaagtgcttataatcgtctgttgacattcaccagtaacaacttggcggttaca |
1031664 |
T |
|
| Q |
276 |
cacatgactgaaatttggaacaaggaagtgcctttgaaaatcagtctctttgcttggcgcttgttacgtgatagattacttacaacggacaatttaatca |
375 |
Q |
| |
|
||||| ||||||||||||||||||||||||||| |||||||||| ||||| |||||||||||||||||| ||||||||| |||||||||||||||||| |
|
|
| T |
1031665 |
cacat-actgaaatttggaacaaggaagtgcctctgaaaatcagcctcttcgcttggcgcttgttacgtaatagattaccatcaacggacaatttaatca |
1031763 |
T |
|
| Q |
376 |
aaagacaca-ttttacatccgaatgttcatttctgcgtggggcgatgcggcatgatagaagatgcaaaacacttattcatctcttgt |
461 |
Q |
| |
|
||||||||| |||||||||| |||| || || |||||||| ||||| |||||||||||||||||||||||||||| |||||||| |
|
|
| T |
1031764 |
aaagacacatttttacatccaaatgcgcagttatgcgtgggcggatgcaacatgatagaagatgcaaaacacttattcctctcttgt |
1031850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 138; E-Value: 6e-72
Query Start/End: Original strand, 179 - 464
Target Start/End: Complemental strand, 17194646 - 17194361
Alignment:
| Q |
179 |
caggtggatttggcacttgcatgcctccaacagttataatgttacaagtgtttataatcatctgttgacattcaccaataacaacttgtcggttactcac |
278 |
Q |
| |
|
|||||| ||||||||||| ||||||| ||||| ||||||||| |||||| |||||| ||| ||||||||| |||| ||||||||| |||||||| || |
|
|
| T |
17194646 |
caggtgcatttggcacttacatgccttcaacaattataatgtctcaagtgcttataaccatatgttgacatcaaccagcaacaacttggcggttactaac |
17194547 |
T |
|
| Q |
279 |
atgactgaaatttggaacaaggaagtgcctttgaaaatcagtctctttgcttggcgcttgttacgtgatagattacttacaacggacaatttaatcaaaa |
378 |
Q |
| |
|
|| | |||||||||||||||||||||||| |||||||||||||||| || ||||||||||||||||||||||||| |||||||||||| ||||||||| |
|
|
| T |
17194546 |
atcattgaaatttggaacaaggaagtgcccctgaaaatcagtctcttcgcgtggcgcttgttacgtgatagattaccaacaacggacaatctaatcaaaa |
17194447 |
T |
|
| Q |
379 |
gacacattttacatccgaatgttcatttctgcgtggggcgatgcggcatgatagaagatgcaaaacacttattcatctcttgtgat |
464 |
Q |
| |
|
|||||||||||||||||||| | | || || ||||| || ||||| | |||||||||||||| ||||||||| ||||||||||| |
|
|
| T |
17194446 |
tacacattttacatccgaatgcttagttatgtgtgggtcgttgcggtacaatagaagatgcaaatcacttattcctctcttgtgat |
17194361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 176 - 464
Target Start/End: Complemental strand, 40858791 - 40858501
Alignment:
| Q |
176 |
tgacaggtggatttggcacttgcatgcctccaacagttata--atgttacaagtgtttataatcatctgttgacattcaccaataacaacttgtcggtta |
273 |
Q |
| |
|
||||||||||||||||||||| ||||| ||||||| |||| |||| ||||||| || ||| |||||||| ||| | || ||||||||||| | | |
|
|
| T |
40858791 |
tgacaggtggatttggcacttacatgcttccaacaactatataatgtcacaagtgcttgtaaccatctgttaacaccaatcagcaacaacttgtcagcaa |
40858692 |
T |
|
| Q |
274 |
ctcacatgactgaaatttggaacaaggaagtgcctttgaaaatcagtctctttgcttggcgcttgttacgtgatagattacttacaacggacaatttaat |
373 |
Q |
| |
|
|||||| | | ||||| ||||||||||||||||| ||||||| ||||||||||||||||| | || || |||||||||| |||||||||||| |||| |
|
|
| T |
40858691 |
ctcacacgtcagaaatctggaacaaggaagtgcccctgaaaattagtctctttgcttggcgtctattgcgggatagattaccaacaacggacaatctaat |
40858592 |
T |
|
| Q |
374 |
caaaagacacattttacatccgaatgttcatttctgcgtggggcgatgcggcatgatagaagatgcaaaacacttattcatctcttgtgat |
464 |
Q |
| |
|
|||||||||||||||| ||| |||| || || ||| |||| ||||||||||||| || |||||||||||||||||| ||||||||||| |
|
|
| T |
40858591 |
taaaagacacattttacttccaaatgctcgattatgcctgggtggatgcggcatgatggaggatgcaaaacacttattcctctcttgtgat |
40858501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 176 - 464
Target Start/End: Original strand, 32574804 - 32575092
Alignment:
| Q |
176 |
tgacaggtggatttggcacttgcatgcctccaacagttataatgttacaagtgtttataatcatctgttgacattcaccaataacaacttgtcggttact |
275 |
Q |
| |
|
|||||||||||||||||| || ||||| ||||||| |||||||| ||||||| ||||||||| ||||| ||| || |||||||||||| | | || | |
|
|
| T |
32574804 |
tgacaggtggatttggcatttacatgcatccaacaaatataatgtcacaagtgcttataatcacttgttgtcatcaacaaataacaacttggcagctaat |
32574903 |
T |
|
| Q |
276 |
cacatgactgaaatttggaacaaggaagtgcctttgaaaatcagtctctttgcttggcgcttgttacgtgatagattacttacaacggacaatttaatca |
375 |
Q |
| |
|
||||| |||||||||||||| |||||||||||||| ||| |||||||||||| |||||| || | ||| ||||||||| | ||| ||||||||| | | |
|
|
| T |
32574904 |
cacataactgaaatttggaataaggaagtgcctttaaaagtcagtctctttgtttggcgtctgcttcgtaatagattaccaataacagacaatttagtta |
32575003 |
T |
|
| Q |
376 |
aaagacacattttacatccgaatgttcatttctgcgtggggcgatgcggcatgatagaagatgcaaaacacttattcatctcttgtgat |
464 |
Q |
| |
|
||||||| ||| |||| || ||| ||| | || ||||| |||| |||||| ||||||| ||| | ||||||||| ||||||||||| |
|
|
| T |
32575004 |
aaagacaaattatacaaccaaattctcaagtttgtgtgggcagatgtggcatgttagaagacgcagagcacttattcttctcttgtgat |
32575092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 176 - 464
Target Start/End: Original strand, 5555094 - 5555382
Alignment:
| Q |
176 |
tgacaggtggatttggcacttgcatgcctccaacagttataatgttacaagtgtttataatcatctgttgacattcaccaataacaacttgtcggttact |
275 |
Q |
| |
|
|||||||||||||||||| || ||| | ||||||| ||||| || ||||||| ||||||| | ||||| ||| || |||||||||||| | | | | |
|
|
| T |
5555094 |
tgacaggtggatttggcatttacattcatccaacaaatataacgtcacaagtgcttataattacttgttgtcatcaacaaataacaacttggcagctgat |
5555193 |
T |
|
| Q |
276 |
cacatgactgaaatttggaacaaggaagtgcctttgaaaatcagtctctttgcttggcgcttgttacgtgatagattacttacaacggacaatttaatca |
375 |
Q |
| |
|
||||| |||||||||||||| |||||||||||||| ||| ||||||||||||||||||| || | ||| ||||||||| ||||| |||||||| | | |
|
|
| T |
5555194 |
cacataactgaaatttggaataaggaagtgcctttaaaagtcagtctctttgcttggcgtctgcttcgtaatagattaccaacaacaaacaatttagtta |
5555293 |
T |
|
| Q |
376 |
aaagacacattttacatccgaatgttcatttctgcgtggggcgatgcggcatgatagaagatgcaaaacacttattcatctcttgtgat |
464 |
Q |
| |
|
||||||| ||| |||| || |||| ||| | || ||||| |||| |||||| ||||||| ||| ||||||||||| ||||||||||| |
|
|
| T |
5555294 |
aaagacaaattatacaaccaaatgctcaagtttgtgtgggcggatgtggcatgttagaagacgcagaacacttattcttctcttgtgat |
5555382 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 176 - 449
Target Start/End: Original strand, 19323555 - 19323828
Alignment:
| Q |
176 |
tgacaggtggatttggcacttgcatgcctccaacagttataatgttacaagtgtttataatcatctgttgacattcaccaataacaacttgtcggttact |
275 |
Q |
| |
|
|||||||||||||||||| || ||| | ||||||| |||||||| ||||||| ||||||| | ||||| ||| || |||||||||||| | | | | |
|
|
| T |
19323555 |
tgacaggtggatttggcatttacattcatccaacaaatataatgtcacaagtgcttataattacttgttgtcatcaacaaataacaacttggcagctgat |
19323654 |
T |
|
| Q |
276 |
cacatgactgaaatttggaacaaggaagtgcctttgaaaatcagtctctttgcttggcgcttgttacgtgatagattacttacaacggacaatttaatca |
375 |
Q |
| |
|
||||| |||||||||||||| |||||||||||||| ||| ||||||||||||||||||| || | | | ||||||||| ||||| ||||||||| | | |
|
|
| T |
19323655 |
cacataactgaaatttggaataaggaagtgcctttaaaagtcagtctctttgcttggcgtctgcttcttaatagattaccaacaacagacaatttagtta |
19323754 |
T |
|
| Q |
376 |
aaagacacattttacatccgaatgttcatttctgcgtggggcgatgcggcatgatagaagatgcaaaacactta |
449 |
Q |
| |
|
||||||| ||| |||| || |||| ||| | || ||||| |||| |||||| ||||||| ||| | |||||| |
|
|
| T |
19323755 |
aaagacaaattatacaaccaaatgctcaagtttgtgtgggcggatgtggcatgttagaagacgcagagcactta |
19323828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 176 - 464
Target Start/End: Complemental strand, 29126622 - 29126334
Alignment:
| Q |
176 |
tgacaggtggatttggcacttgcatgcctccaacagttataatgttacaagtgtttataatcatctgttgacattcaccaataacaacttgtcggttact |
275 |
Q |
| |
|
|||||||||||||||||| || ||| | ||||||| ||||| || ||||||| ||||||| | ||||| ||| || |||||||||||| | | | | |
|
|
| T |
29126622 |
tgacaggtggatttggcatttacattcatccaacaaatataacgtcacaagtgcttataattacttgttgtcatcaacaaataacaacttgacagctgat |
29126523 |
T |
|
| Q |
276 |
cacatgactgaaatttggaacaaggaagtgcctttgaaaatcagtctctttgcttggcgcttgttacgtgatagattacttacaacggacaatttaatca |
375 |
Q |
| |
|
||||| ||||||||||| || |||||||||||||| ||| ||||||||||||||||||| || | ||| ||||||||| ||||| ||||||||| | | |
|
|
| T |
29126522 |
cacataactgaaatttgaaataaggaagtgcctttaaaagtcagtctctttgcttggcgtctgcttcgtaatagattaccaacaacagacaatttagtta |
29126423 |
T |
|
| Q |
376 |
aaagacacattttacatccgaatgttcatttctgcgtggggcgatgcggcatgatagaagatgcaaaacacttattcatctcttgtgat |
464 |
Q |
| |
|
||||||| ||| |||| | |||| | | | || ||||| |||| |||||| ||||||| | | ||||||||||| ||||||||||| |
|
|
| T |
29126422 |
aaagacaaattatacaatcaaatgcttaagtttgtgtgggcggatgtggcatgttagaagacgtagaacacttattcttctcttgtgat |
29126334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 275 - 464
Target Start/End: Original strand, 38141673 - 38141862
Alignment:
| Q |
275 |
tcacatgactgaaatttggaacaaggaagtgcctttgaaaatcagtctctttgcttggcgcttgttacgtgatagattacttacaacggacaatttaatc |
374 |
Q |
| |
|
|||||| |||||||||||||| |||||||||||||| ||| |||||||| |||||||||| || | | | ||||||||| ||||| ||||||||| | |
|
|
| T |
38141673 |
tcacataactgaaatttggaataaggaagtgcctttaaaagtcagtctccttgcttggcgtctgcttcttaatagattaccaacaacagacaatttagtt |
38141772 |
T |
|
| Q |
375 |
aaaagacacattttacatccgaatgttcatttctgcgtggggcgatgcggcatgatagaagatgcaaaacacttattcatctcttgtgat |
464 |
Q |
| |
|
|||||||| ||| |||| || |||| ||| | || ||||| |||| |||||| ||||||| ||| ||||||||||| ||||||||||| |
|
|
| T |
38141773 |
aaaagacaaattatacaaccaaatgctcaagtttgtgtgggcggatgtggcatgttagaagacgcagaacacttattcttctcttgtgat |
38141862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 176 - 464
Target Start/End: Original strand, 15669026 - 15669314
Alignment:
| Q |
176 |
tgacaggtggatttggcacttgcatgcctccaacagttataatgttacaagtgtttataatcatctgttgacattcaccaataacaacttgtcggttact |
275 |
Q |
| |
|
|||||||||||||||||| || ||||| ||||||| ||||| || ||||||| |||||| || ||||| ||| || |||||||||||| | | | |
|
|
| T |
15669026 |
tgacaggtggatttggcatttacatgcatccaacaaatataacgtcacaagtgcttataaccacttgttgtcatcaacaaataacaacttggaagctgat |
15669125 |
T |
|
| Q |
276 |
cacatgactgaaatttggaacaaggaagtgcctttgaaaatcagtctctttgcttggcgcttgttacgtgatagattacttacaacggacaatttaatca |
375 |
Q |
| |
|
||||| | |||||||||||| |||||||||||||| ||| ||||||||||||||||||| || | ||| |||||||| ||||| ||||||||| | | |
|
|
| T |
15669126 |
cacataaatgaaatttggaataaggaagtgcctttaaaagtcagtctctttgcttggcgtctgcttcgtagtagattaccaacaacagacaatttagtta |
15669225 |
T |
|
| Q |
376 |
aaagacacattttacatccgaatgttcatttctgcgtggggcgatgcggcatgatagaagatgcaaaacacttattcatctcttgtgat |
464 |
Q |
| |
|
||||||| ||| ||| | |||| ||| | || ||| | |||| |||||| ||||||| ||| | ||||||||| ||||||||||| |
|
|
| T |
15669226 |
aaagacaaattaaacaactaaatgctcaagtttgtgtgtgcggatgtggcatgttagaagacgcagagcacttattcttctcttgtgat |
15669314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 176 - 464
Target Start/End: Complemental strand, 18300214 - 18299926
Alignment:
| Q |
176 |
tgacaggtggatttggcacttgcatgcctccaacagttataatgttacaagtgtttataatcatctgttgacattcaccaataacaacttgtcggttact |
275 |
Q |
| |
|
|||||||||||||||||| || |||| ||||||| ||||| || |||||| |||||| || ||||| ||| || |||||||||||| | | | | |
|
|
| T |
18300214 |
tgacaggtggatttggcatttacatgtatccaacaaatataacgtcgcaagtgcttataaccacttgttgtcatcaacaaataacaacttggcagctgat |
18300115 |
T |
|
| Q |
276 |
cacatgactgaaatttggaacaaggaagtgcctttgaaaatcagtctctttgcttggcgcttgttacgtgatagattacttacaacggacaatttaatca |
375 |
Q |
| |
|
||||| | |||||||| ||| |||||||||||||| ||| | ||||| ||||||||||| |||| || ||||||||| ||||| |||||| || | | |
|
|
| T |
18300114 |
cacataattgaaattttgaataaggaagtgcctttaaaagttagtctttttgcttggcgtctgttgtgtaatagattaccaacaacagacaatctagtta |
18300015 |
T |
|
| Q |
376 |
aaagacacattttacatccgaatgttcatttctgcgtggggcgatgcggcatgatagaagatgcaaaacacttattcatctcttgtgat |
464 |
Q |
| |
|
||||| | |||||||| || |||| ||| || || ||||| |||| |||||| | ||||| ||||||||||||| |||| |||||| |
|
|
| T |
18300014 |
aaagataaattttacaaccaaatgctcagttttgtgtgggcggatgtggcatgctggaagacacaaaacacttatttttctcgtgtgat |
18299926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 176 - 464
Target Start/End: Original strand, 29626248 - 29626536
Alignment:
| Q |
176 |
tgacaggtggatttggcacttgcatgcctccaacagttataatgttacaagtgtttataatcatctgttgacattcaccaataacaacttgtcggttact |
275 |
Q |
| |
|
|||||||||||||||||| || ||| | ||||| | ||||| || ||||||| ||||||| | ||||||| | || |||||||||||| | | | | |
|
|
| T |
29626248 |
tgacaggtggatttggcatttacattcatccaagaaatataacgtcacaagtgcttataattacttgttgacttcaacaaataacaacttggcagctgat |
29626347 |
T |
|
| Q |
276 |
cacatgactgaaatttggaacaaggaagtgcctttgaaaatcagtctctttgcttggcgcttgttacgtgatagattacttacaacggacaatttaatca |
375 |
Q |
| |
|
|| || |||||||||||||| |||||||||||||| ||| |||||||| || ||||||| || | | | ||||||||| || | ||||||||| | | |
|
|
| T |
29626348 |
cagataactgaaatttggaataaggaagtgcctttaaaagtcagtctccttacttggcgtctgcttcttaatagattaccaactatagacaatttagtta |
29626447 |
T |
|
| Q |
376 |
aaagacacattttacatccgaatgttcatttctgcgtggggcgatgcggcatgatagaagatgcaaaacacttattcatctcttgtgat |
464 |
Q |
| |
|
||||||| ||| |||| || |||| ||| | || ||||| |||| |||||| ||||||| ||| | ||||||||| ||||||||||| |
|
|
| T |
29626448 |
aaagacaaattatacaaccaaatgctcaagtttgtgtgggcggatgtggcatgttagaagacgcagagcacttattcttctcttgtgat |
29626536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 182 - 307
Target Start/End: Complemental strand, 25289364 - 25289239
Alignment:
| Q |
182 |
gtggatttggcacttgcatgcctccaacagttataatgttacaagtgtttataatcatctgttgacattcaccaataacaacttgtcggttactcacatg |
281 |
Q |
| |
|
||||||||||||||| ||||| ||||||| |||||| || |||| || |||||| |||||||| ||| |||| ||||||||||| | ||||||| | |
|
|
| T |
25289364 |
gtggatttggcacttacatgcttccaacacttataacgtcacaaatgcttataaccatctgtttacaccaaccagcaacaacttgtcagcaactcacacg |
25289265 |
T |
|
| Q |
282 |
actgaaatttggaacaaggaagtgcc |
307 |
Q |
| |
|
| ||||| |||||| |||||||||| |
|
|
| T |
25289264 |
tcagaaatctggaactaggaagtgcc |
25289239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 169; Significance: 2e-90; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 176 - 464
Target Start/End: Complemental strand, 12913019 - 12912731
Alignment:
| Q |
176 |
tgacaggtggatttggcacttgcatgcctccaacagttataatgttacaagtgtttataatcatctgttgacattcaccaataacaacttgtcggttact |
275 |
Q |
| |
|
||||||||||||||||||||| |||||||||| |||||||||||| |||||| |||||| ||| ||||||||| | || |||||||||| |||||||| |
|
|
| T |
12913019 |
tgacaggtggatttggcacttacatgcctccagcagttataatgtctcaagtgcttataaccatatgttgacatcaaacagtaacaacttgacggttact |
12912920 |
T |
|
| Q |
276 |
cacatgactgaaatttggaacaaggaagtgcctttgaaaatcagtctctttgcttggcgcttgttacgtgatagattacttacaacggacaatttaatca |
375 |
Q |
| |
|
||||| |||||||||||||||||||||||||| |||||||||| |||| |||||||||||||||||||||||||||| |||||||||||| |||||| |
|
|
| T |
12912919 |
cacattactgaaatttggaacaaggaagtgcccctgaaaatcagcttcttcgcttggcgcttgttacgtgatagattaccaacaacggacaatctaatca |
12912820 |
T |
|
| Q |
376 |
aaagacacattttacatccgaatgttcatttctgcgtggggcgatgcggcatgatagaagatgcaaaacacttattcatctcttgtgat |
464 |
Q |
| |
|
|||||||||||||||||||||||| ||| || |||||||| ||||||| | ||||||||| ||||||||||||||| ||||||||||| |
|
|
| T |
12912819 |
aaagacacattttacatccgaatgctcagttatgcgtgggtggatgcggtacgatagaagacgcaaaacacttattcctctcttgtgat |
12912731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 274 - 464
Target Start/End: Original strand, 6028758 - 6028948
Alignment:
| Q |
274 |
ctcacatgactgaaatttggaacaaggaagtgcctttgaaaatcagtctctttgcttggcgcttgttacgtgatagattacttacaacggacaatttaat |
373 |
Q |
| |
|
||||| |||| ||||||||||||||||||||||| |||||||| |||||||||||||| || |||| ||||||||||| | |||||||| ||| |||| |
|
|
| T |
6028758 |
ctcacttgacagaaatttggaacaaggaagtgcccttgaaaattagtctctttgcttgacgtctgttgcgtgatagattgccaacaacggataatctaat |
6028857 |
T |
|
| Q |
374 |
caaaagacacattttacatccgaatgttcatttctgcgtggggcgatgcggcatgatagaagatgcaaaacacttattcatctcttgtgat |
464 |
Q |
| |
|
|||||||||||||||| ||| |||| ||| || |||||||| ||||||| ||||| || ||||| |||||||||||||||||||||||| |
|
|
| T |
6028858 |
taaaagacacattttacttccaaatgctcaattttgcgtgggtggatgcggtatgatggaggatgctaaacacttattcatctcttgtgat |
6028948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 176 - 464
Target Start/End: Original strand, 7093257 - 7093545
Alignment:
| Q |
176 |
tgacaggtggatttggcacttgcatgcctccaacagttataatgttacaagtgtttataatcatctgttgacattcaccaataacaacttgtcggttact |
275 |
Q |
| |
|
|||||||||||||||||| || ||| | ||||||| ||||| || ||||||| ||||||| | ||||| | | || |||||||||||| | | | | |
|
|
| T |
7093257 |
tgacaggtggatttggcatttacattcatccaacaaatataacgtcacaagtgcttataattacttgttgtcttcaacgaataacaacttggcagctgat |
7093356 |
T |
|
| Q |
276 |
cacatgactgaaatttggaacaaggaagtgcctttgaaaatcagtctctttgcttggcgcttgttacgtgatagattacttacaacggacaatttaatca |
375 |
Q |
| |
|
||||| |||||||||||||| |||||||||||||| ||| |||||||| |||||||||| || | | | ||||||||| ||||| ||||||||| | | |
|
|
| T |
7093357 |
cacataactgaaatttggaataaggaagtgcctttaaaagtcagtctccttgcttggcgtctgcttcttaatagattaccaacaacagacaatttagtta |
7093456 |
T |
|
| Q |
376 |
aaagacacattttacatccgaatgttcatttctgcgtggggcgatgcggcatgatagaagatgcaaaacacttattcatctcttgtgat |
464 |
Q |
| |
|
||||||| ||| |||| || |||| ||| | || ||||| |||| |||||| ||||||| ||| | ||||||||| ||||||||||| |
|
|
| T |
7093457 |
aaagacaaattatacaaccaaatgctcaagtttgtgtgggcggatgtggcatgttagaagacgcagagcacttattcttctcttgtgat |
7093545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 357 - 464
Target Start/End: Complemental strand, 18973203 - 18973094
Alignment:
| Q |
357 |
acaacggacaatttaatcaaaagacacattttacatccgaatgttcatttctgcgtggggcgatgcggcatgatagaagatgcaaaacact--tattcat |
454 |
Q |
| |
|
|||||||||||| ||||||||||||| ||||||||| ||||| ||| || |||||||| ||||||| |||||||||||||||||||||| ||||| | |
|
|
| T |
18973203 |
acaacggacaatctaatcaaaagacatgttttacatctgaatgctcagttatgcgtgggtggatgcggtatgatagaagatgcaaaacacttatattcct |
18973104 |
T |
|
| Q |
455 |
ctcttgtgat |
464 |
Q |
| |
|
|||||||||| |
|
|
| T |
18973103 |
ctcttgtgat |
18973094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 363 - 462
Target Start/End: Original strand, 24393432 - 24393531
Alignment:
| Q |
363 |
gacaatttaatcaaaagacacattttacatccgaatgttcatttctgcgtggggcgatgcggcatgatagaagatgcaaaacacttattcatctcttgtg |
462 |
Q |
| |
|
|||||| |||||||||||||| |||||||| |||| | | || |||||||| ||||||| ||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
24393432 |
gacaatctaatcaaaagacaccttttacatatgaatacttagttatgcgtgggtggatgcggtatgatagaagatgcaaaacacttattcctctcttgtg |
24393531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 175 - 334
Target Start/End: Complemental strand, 30975588 - 30975429
Alignment:
| Q |
175 |
ttgacaggtggatttggcacttgcatgcctccaacagttataatgttacaagtgtttataatcatctgttgacattcaccaataacaacttgtcggttac |
274 |
Q |
| |
|
||||||||| ||||| ||||| ||||| |||| || |||||||| |||||| |||||||||| ||||| ||| ||| ||||||||| | ||| |
|
|
| T |
30975588 |
ttgacaggtaaatttgacacttacatgcgtccagcaaatataatgtcacaagttcttataatcatttgttgtcatcagtcaacaacaacttgacaactac |
30975489 |
T |
|
| Q |
275 |
tcacatgactgaaatttggaacaaggaagtgcctttgaaaatcagtctctttgcttggcg |
334 |
Q |
| |
|
|||||| || ||||||||||| || |||||||| | ||| | ||||| ||||||||||| |
|
|
| T |
30975488 |
tcacataacagaaatttggaataaagaagtgcccctaaaagttagtctttttgcttggcg |
30975429 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 175 - 334
Target Start/End: Complemental strand, 30982027 - 30981868
Alignment:
| Q |
175 |
ttgacaggtggatttggcacttgcatgcctccaacagttataatgttacaagtgtttataatcatctgttgacattcaccaataacaacttgtcggttac |
274 |
Q |
| |
|
||||||||| ||||| ||||| ||||| |||| || |||||||| |||||| |||||||||| ||||| ||| ||| ||||||||| | ||| |
|
|
| T |
30982027 |
ttgacaggtaaatttgacacttacatgcgtccagcaaatataatgtcacaagttcttataatcatttgttgtcatcagtcaacaacaacttgacaactac |
30981928 |
T |
|
| Q |
275 |
tcacatgactgaaatttggaacaaggaagtgcctttgaaaatcagtctctttgcttggcg |
334 |
Q |
| |
|
|||||| || ||||||||||| || |||||||| | ||| | ||||| ||||||||||| |
|
|
| T |
30981927 |
tcacataacagaaatttggaataaagaagtgcccctaaaagttagtctttttgcttggcg |
30981868 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 175 - 334
Target Start/End: Complemental strand, 30988191 - 30988032
Alignment:
| Q |
175 |
ttgacaggtggatttggcacttgcatgcctccaacagttataatgttacaagtgtttataatcatctgttgacattcaccaataacaacttgtcggttac |
274 |
Q |
| |
|
||||||||| ||||| ||||| ||||| |||| || |||||||| |||||| |||||||||| ||||| ||| ||| ||||||||| | ||| |
|
|
| T |
30988191 |
ttgacaggtaaatttgacacttacatgcgtccagcaaatataatgtcacaagttcttataatcatttgttgtcatcagtcaacaacaacttgacaactac |
30988092 |
T |
|
| Q |
275 |
tcacatgactgaaatttggaacaaggaagtgcctttgaaaatcagtctctttgcttggcg |
334 |
Q |
| |
|
|||||| || ||||||||||| || |||||||| | ||| | ||||| ||||||||||| |
|
|
| T |
30988091 |
tcacataacagaaatttggaataaagaagtgcccctaaaagttagtctttttgcttggcg |
30988032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 159; Significance: 2e-84; HSPs: 9)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 274 - 464
Target Start/End: Complemental strand, 4532748 - 4532558
Alignment:
| Q |
274 |
ctcacatgactgaaatttggaacaaggaagtgcctttgaaaatcagtctctttgcttggcgcttgttacgtgatagattacttacaacggacaatttaat |
373 |
Q |
| |
|
|||||||||||||||||||||||||||||||| || |||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
4532748 |
ctcacatgactgaaatttggaacaaggaagtgtctctgaaaatcagtctcttcgcttggcgcttgttacgtgatagattacctacaacggacaatttaat |
4532649 |
T |
|
| Q |
374 |
caaaagacacattttacatccgaatgttcatttctgcgtggggcgatgcggcatgatagaagatgcaaaacacttattcatctcttgtgat |
464 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
4532648 |
caaaagacacattttacatctgaatgttcatttatgcgtggggggatgcggcatgatagaagatgcaaaacacttattcctctcttgtgat |
4532558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 176 - 464
Target Start/End: Original strand, 34548697 - 34548980
Alignment:
| Q |
176 |
tgacaggtggatttggcacttgcatgcctccaacagttataatgttacaagtgtttataatcatctgttgacattcaccaataacaacttgtcggttact |
275 |
Q |
| |
|
||||||||||||||||||||| |||||||||| |||||||||||| |||||| |||||| ||| ||||||||| ||| | ||||||| ||||||| |
|
|
| T |
34548697 |
tgacaggtggatttggcacttacatgcctccagcagttataatgtctcaagtgcttataaccatatgttgacat----caa-accaacttggtggttact |
34548791 |
T |
|
| Q |
276 |
cacatgactgaaatttggaacaaggaagtgcctttgaaaatcagtctctttgcttggcgcttgttacgtgatagattacttacaacggacaatttaatca |
375 |
Q |
| |
|
||||| | |||||||||||||||||||||||| |||||||||| ||||| |||||||||||||||||||||||||||| |||||||||||| |||||| |
|
|
| T |
34548792 |
cacattattgaaatttggaacaaggaagtgcccctgaaaatcagcctcttcgcttggcgcttgttacgtgatagattaccaacaacggacaatctaatca |
34548891 |
T |
|
| Q |
376 |
aaagacacattttacatccgaatgttcatttctgcgtggggcgatgcggcatgatagaagatgcaaaacacttattcatctcttgtgat |
464 |
Q |
| |
|
|||||||||||||||||||||||| ||| || |||||||| ||||||| | ||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
34548892 |
aaagacacattttacatccgaatgctcagttatgcgtgggtggatgcggtacgatagaagacgcaaaacacttattcatctcttgtgat |
34548980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 180 - 464
Target Start/End: Complemental strand, 31912314 - 31912030
Alignment:
| Q |
180 |
aggtggatttggcacttgcatgcctccaacagttataatgttacaagtgtttataatcatctgttgacattcaccaataacaacttgtcggttactcaca |
279 |
Q |
| |
|
|||||||||| | ||| |||||||||| |||||||||||| ||||||| |||||| ||| ||||||||| || || ||||||||| | ||||||||| |
|
|
| T |
31912314 |
aggtggatttcacccttacatgcctccagcagttataatgtcacaagtgcttataaccatgtgttgacatcaactaacaacaacttgacaattactcaca |
31912215 |
T |
|
| Q |
280 |
tgactgaaatttggaacaaggaagtgcctttgaaaatcagtctctttgcttggcgcttgttacgtgatagattacttacaacggacaatttaatcaaaag |
379 |
Q |
| |
|
|||| ||||||||||||||||||||||| ||||||||||| |||| | |||||||||||||||||||||||||| |||||||||||| |||||||||| |
|
|
| T |
31912214 |
tgacagaaatttggaacaaggaagtgcccctgaaaatcagtgtcttcggttggcgcttgttacgtgatagattaccaacaacggacaatctaatcaaaag |
31912115 |
T |
|
| Q |
380 |
acacattttacatccgaatgttcatttctgcgtggggcgatgcggcatgatagaagatgcaaaacacttattcatctcttgtgat |
464 |
Q |
| |
|
||||||||||| ||| |||| | | || || ||||| ||| || | |||||||||||| ||||||||||||| ||||||||||| |
|
|
| T |
31912114 |
acacattttacttccaaatgcttagttatgtgtgggtggatacgacgtgatagaagatgtaaaacacttattcctctcttgtgat |
31912030 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 176 - 464
Target Start/End: Original strand, 26676230 - 26676518
Alignment:
| Q |
176 |
tgacaggtggatttggcacttgcatgcctccaacagttataatgttacaagtgtttataatcatctgttgacattcaccaataacaacttgtcggttact |
275 |
Q |
| |
|
||||||||||||||||||||| ||||| ||||||| |||||||| ||||||| |||||| |||||||| ||| | | || ||||||||||| | ||| |
|
|
| T |
26676230 |
tgacaggtggatttggcacttacatgcttccaacaactataatgtcacaagtgcttataaccatctgttaacactaatcagcaacaacttgtcagcaact |
26676329 |
T |
|
| Q |
276 |
cacatgactgaaatttggaacaaggaagtgcctttgaaaatcagtctctttgcttggcgcttgttacgtgatagattacttacaacggacaatttaatca |
375 |
Q |
| |
|
|||| | | |||||||||||||||||||| || ||||||| ||||||||||||||||| |||| || |||||||||| |||||||||||| |||| | |
|
|
| T |
26676330 |
cacacgtcagaaatttggaacaaggaagtacccctgaaaattagtctctttgcttggcgtctgttgcgggatagattaccaacaacggacaatctaatta |
26676429 |
T |
|
| Q |
376 |
aaagacacattttacatccgaatgttcatttctgcgtggggcgatgcggcatgatagaagatgcaaaacacttattcatctcttgtgat |
464 |
Q |
| |
|
||||||||||||||| || |||| ||| || |||||||| ||||||||||||| | |||||||||||||||||| ||||||||||| |
|
|
| T |
26676430 |
aaagacacattttacttctaaatgctcagttatgcgtgggtggatgcggcatgatgggggatgcaaaacacttattcctctcttgtgat |
26676518 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 294 - 464
Target Start/End: Complemental strand, 33677147 - 33676977
Alignment:
| Q |
294 |
aacaaggaagtgcctttgaaaatcagtctctttgcttggcgcttgttacgtgatagattacttacaacggacaatttaatcaaaagacacattttacatc |
393 |
Q |
| |
|
|||||||||||||| | ||||| |||| |||||||||| | |||| || |||||||||| |||||||| ||| |||| |||||||||||||||| || |
|
|
| T |
33677147 |
aacaaggaagtgcccctaaaaattagtcactttgcttggtgtctgttgcgggatagattaccaacaacggataatctaattaaaagacacattttacttc |
33677048 |
T |
|
| Q |
394 |
cgaatgttcatttctgcgtggggcgatgcggcatgatagaagatgcaaaacacttattcatctcttgtgat |
464 |
Q |
| |
|
| |||| ||| || |||||||| ||||||||||||| || |||||||||||||||||| ||||||||||| |
|
|
| T |
33677047 |
caaatgctcaattatgcgtgggtggatgcggcatgatggaggatgcaaaacacttattcctctcttgtgat |
33676977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 297 - 464
Target Start/End: Original strand, 15759413 - 15759580
Alignment:
| Q |
297 |
aaggaagtgcctttgaaaatcagtctctttgcttggcgcttgttacgtgatagattacttacaacggacaatttaatcaaaagacacattttacatccga |
396 |
Q |
| |
|
|||||||||||||| ||| ||||||||||||||||||| || | | | ||||||||| ||||| ||||||||| | |||||||| ||| |||| || | |
|
|
| T |
15759413 |
aaggaagtgcctttaaaagtcagtctctttgcttggcgtctgcttcttaatagattaccaacaacagacaatttagttaaaagacaaattatacaaccaa |
15759512 |
T |
|
| Q |
397 |
atgttcatttctgcgtggggcgatgcggcatgatagaagatgcaaaacacttattcatctcttgtgat |
464 |
Q |
| |
|
||| ||| | || ||||| |||| |||||| ||||||| ||| | ||||||||| ||||||||||| |
|
|
| T |
15759513 |
atgctcaagtttgtgtgggcggatgtggcatgttagaagacgcagagcacttattcttctcttgtgat |
15759580 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 363 - 464
Target Start/End: Original strand, 46731589 - 46731690
Alignment:
| Q |
363 |
gacaatttaatcaaaagacacattttacatccgaatgttcatttctgcgtggggcgatgcggcatgatagaagatgcaaaacacttattcatctcttgtg |
462 |
Q |
| |
|
|||||| |||| |||||||| ||||||| ||| |||| ||| || |||||||| ||||||| ||||| || |||||||||||||||||| ||||||||| |
|
|
| T |
46731589 |
gacaatctaattaaaagacatattttacttccaaatgctcagttatgcgtgggtggatgcggtatgatggaggatgcaaaacacttattcctctcttgtg |
46731688 |
T |
|
| Q |
463 |
at |
464 |
Q |
| |
|
|| |
|
|
| T |
46731689 |
at |
46731690 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 395 - 464
Target Start/End: Complemental strand, 19228438 - 19228369
Alignment:
| Q |
395 |
gaatgttcatttctgcgtggggcgatgcggcatgatagaagatgcaaaacacttattcatctcttgtgat |
464 |
Q |
| |
|
||||||||| || ||| |||| ||||||| | ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19228438 |
gaatgttcagttttgcatgggtggatgcggtacgatagaagatgcaaaacacttattcatctcttgtgat |
19228369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 418 - 467
Target Start/End: Original strand, 52022441 - 52022490
Alignment:
| Q |
418 |
gatgcggcatgatagaagatgcaaaacacttattcatctcttgtgatatt |
467 |
Q |
| |
|
||||||||||| | ||||||||||||||||||||| ||| | |||||||| |
|
|
| T |
52022441 |
gatgcggcatgctggaagatgcaaaacacttattcctctttcgtgatatt |
52022490 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 113; Significance: 5e-57; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 176 - 464
Target Start/End: Complemental strand, 26369704 - 26369416
Alignment:
| Q |
176 |
tgacaggtggatttggcacttgcatgcctccaacagttataatgttacaagtgtttataatcatctgttgacattcaccaataacaacttgtcggttact |
275 |
Q |
| |
|
||||||||||||||||||||| ||||| ||||||| ||||||||| ||||||| |||||| |||||||| ||| | || ||||||||||| | ||| |
|
|
| T |
26369704 |
tgacaggtggatttggcacttacatgcttccaacaattataatgtcacaagtgcttataaccatctgttaacaccaatcagcaacaacttgtcagcaact |
26369605 |
T |
|
| Q |
276 |
cacatgactgaaatttggaacaaggaagtgcctttgaaaatcagtctctttgcttggcgcttgttacgtgatagattacttacaacggacaatttaatca |
375 |
Q |
| |
|
|||| | | |||||||||||||||||||| || ||||||| |||||||||||||||||| |||| || |||||||||| |||||||||||| |||| | |
|
|
| T |
26369604 |
cacacgtcagaaatttggaacaaggaagttcccctgaaaattagtctctttgcttggcgcctgttgcgggatagattaccaacaacggacaatctaatta |
26369505 |
T |
|
| Q |
376 |
aaagacacattttacatccgaatgttcatttctgcgtggggcgatgcggcatgatagaagatgcaaaacacttattcatctcttgtgat |
464 |
Q |
| |
|
||||||||||||||| ||| |||| ||| || |||||||| ||||||| ||| | || ||||||||||| |||||| |||| |||||| |
|
|
| T |
26369504 |
aaagacacattttacttccaaatgctcagttatgcgtgggtggatgcggtatgctggaggatgcaaaacatttattcctctcctgtgat |
26369416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 176 - 457
Target Start/End: Complemental strand, 22581161 - 22580880
Alignment:
| Q |
176 |
tgacaggtggatttggcacttgcatgcctccaacagttataatgttacaagtgtttataatcatctgttgacattcaccaataacaacttgtcggttact |
275 |
Q |
| |
|
|||||||||||||||| |||| |||||||||| || ||||||||| ||||||| |||||| ||| ||||||||| | ||| ||||||||| | | | || |
|
|
| T |
22581161 |
tgacaggtggatttggtacttacatgcctccatcatttataatgtcacaagtgcttataaccatttgttgacatcgatcaacaacaacttggcagctgct |
22581062 |
T |
|
| Q |
276 |
cacatgactgaaatttggaacaaggaagtgcctttgaaaatcagtctctttgcttggcgcttgttacgtgatagattacttacaacggacaatttaatca |
375 |
Q |
| |
|
||| ||| ||||||| ||| | ||||||||| ||||| ||| ||| ||| |||||||| || | ||||||||||||| ||||| || ||| |||| | |
|
|
| T |
22581061 |
cacttgaaagaaatttagaaaatggaagtgcccctgaaactcaatctttttccttggcgcctgatgcgtgatagattaccaacaactgataatctaatta |
22580962 |
T |
|
| Q |
376 |
aaagacacattttacatccgaatgttcatttctgcgtggggcgatgcggcatgatagaagatgcaaaacacttattcatctc |
457 |
Q |
| |
|
|||||||||||| | || ||||| ||| | ||||| || ||||| ||||| | ||||||||||| ||||||||| |||| |
|
|
| T |
22580961 |
aaagacacatttcatttctgaatgctcagctatgcgttggtggatgcagcatgttggaagatgcaaagcacttattcctctc |
22580880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 387 - 464
Target Start/End: Original strand, 19020942 - 19021019
Alignment:
| Q |
387 |
ttacatccgaatgttcatttctgcgtggggcgatgcggcatgatagaagatgcaaaacacttattcatctcttgtgat |
464 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19020942 |
ttacatcagaatgttcatttctgcgtggggcgatgcaacatgatagaagatgcaaaacacttattcatctcttgtgat |
19021019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 222 - 464
Target Start/End: Complemental strand, 40973994 - 40973752
Alignment:
| Q |
222 |
acaagtgtttataatcatctgttgacattcaccaataacaacttgtcggttactcacatgactgaaatttggaacaaggaagtgcctttgaaaatcagtc |
321 |
Q |
| |
|
||||||| |||||| || ||||| ||| || |||||||||||| | | | |||||| |||||||||||||| |||||||||||||| ||| |||||| |
|
|
| T |
40973994 |
acaagtgcttataaccacttgttgtcatcaacaaataacaacttggcagctgatcacataactgaaatttggaataaggaagtgcctttaaaagtcagtc |
40973895 |
T |
|
| Q |
322 |
tctttgcttggcgcttgttacgtgatagattacttacaacggacaatttaatcaaaagacacattttacatccgaatgttcatttctgcgtggggcgatg |
421 |
Q |
| |
|
| ||||||||||| |||| || ||||||||| |||| ||||||||| | |||||||| |||||||| | |||| ||| || || ||||| |||| |
|
|
| T |
40973894 |
tttttgcttggcgtctgttgtgtaatagattaccaacaatagacaatttagttaaaagacaaattttacaatcaaatgctcagttttgtgtgggcggatg |
40973795 |
T |
|
| Q |
422 |
cggcatgatagaagatgcaaaacacttattcatctcttgtgat |
464 |
Q |
| |
|
|||||| | ||||| |||||||||||||| ||||||||||| |
|
|
| T |
40973794 |
tggcatgctggaagacgcaaaacacttatttttctcttgtgat |
40973752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 376 - 464
Target Start/End: Original strand, 22639100 - 22639188
Alignment:
| Q |
376 |
aaagacacattttacatccgaatgttcatttctgcgtggggcgatgcggcatgatagaagatgcaaaacacttattcatctcttgtgat |
464 |
Q |
| |
|
|||||||||||||| |||||||||||||||| || ||||| |||||||||||||||||||||||||||| |||||| ||||||||||| |
|
|
| T |
22639100 |
aaagacacattttatatccgaatgttcatttttgtatggggggatgcggcatgatagaagatgcaaaacatttattcctctcttgtgat |
22639188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 105; Significance: 3e-52; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 176 - 464
Target Start/End: Complemental strand, 10437200 - 10436912
Alignment:
| Q |
176 |
tgacaggtggatttggcacttgcatgcctccaacagttataatgttacaagtgtttataatcatctgttgacattcaccaataacaacttgtcggttact |
275 |
Q |
| |
|
||||| ||||||||||||||| ||||| ||||||| ||||||||| ||||||| |||||| |||||||| ||| | || ||||||||||| | ||| |
|
|
| T |
10437200 |
tgacaagtggatttggcacttacatgcttccaacaattataatgtcacaagtgcttataaccatctgttaacaccaatcagcaacaacttgtcagcaact |
10437101 |
T |
|
| Q |
276 |
cacatgactgaaatttggaacaaggaagtgcctttgaaaatcagtctctttgcttggcgcttgttacgtgatagattacttacaacggacaatttaatca |
375 |
Q |
| |
|
|||| | | ||||||||||| |||||||| || ||||||| |||||||||||||||||| |||| || |||||||||| |||||||||||| |||| | |
|
|
| T |
10437100 |
cacacgtcagaaatttggaataaggaagttcccctgaaaattagtctctttgcttggcgcctgttgcgggatagattaccaacaacggacaatctaatta |
10437001 |
T |
|
| Q |
376 |
aaagacacattttacatccgaatgttcatttctgcgtggggcgatgcggcatgatagaagatgcaaaacacttattcatctcttgtgat |
464 |
Q |
| |
|
||||||||||||||| ||| |||| ||| || |||||||| ||||||| ||| | || ||||||||||| |||||| |||| |||||| |
|
|
| T |
10437000 |
aaagacacattttacttccaaatgctcagttatgcgtgggtggatgcggtatgctggaggatgcaaaacatttattcctctcctgtgat |
10436912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 176 - 464
Target Start/End: Original strand, 15029412 - 15029700
Alignment:
| Q |
176 |
tgacaggtggatttggcacttgcatgcctccaacagttataatgttacaagtgtttataatcatctgttgacattcaccaataacaacttgtcggttact |
275 |
Q |
| |
|
||||||||||||||||| || ||||| ||||||| |||||| || ||||||| |||||| ||||| |||||| | || | || |||| | | || |
|
|
| T |
15029412 |
tgacaggtggatttggccctcacatgcttccaacacttataacgtcacaagtgcttataaccatctattgacaccaaacagcagcatcttggcagcagct |
15029511 |
T |
|
| Q |
276 |
cacatgactgaaatttggaacaaggaagtgcctttgaaaatcagtctctttgcttggcgcttgttacgtgatagattacttacaacggacaatttaatca |
375 |
Q |
| |
|
||| ||| ||||||||||||||||||||||| ||||||| ||||||||||||||||| |||| ||||||||||||| |||||||||||| |||| | |
|
|
| T |
15029512 |
cactcgacagaaatttggaacaaggaagtgcccgtgaaaattagtctctttgcttggcgtctgttgcgtgatagattaccaacaacggacaatctaatta |
15029611 |
T |
|
| Q |
376 |
aaagacacattttacatccgaatgttcatttctgcgtggggcgatgcggcatgatagaagatgcaaaacacttattcatctcttgtgat |
464 |
Q |
| |
|
|||||| | |||||| || |||| ||| || |||||||| ||||||| ||||| || ||||| || |||||||| ||||| ||||| |
|
|
| T |
15029612 |
aaagaccccttttacttcaaaatgctcagttttgcgtgggtggatgcggtatgatggaggatgctaagcacttatttctctctagtgat |
15029700 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 19 - 74
Target Start/End: Complemental strand, 33759213 - 33759158
Alignment:
| Q |
19 |
ttatcaacaaataattagtggtgttaaaaaccaacaaaggatgaaaatgagcagct |
74 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
33759213 |
ttatcaacaaataattagtgatgttaaaaaccaacaaaggatgaaaatgagcagct |
33759158 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 176 - 451
Target Start/End: Complemental strand, 53459676 - 53459401
Alignment:
| Q |
176 |
tgacaggtggatttggcacttgcatgcctccaacagttataatgttacaagtgtttataatcatctgttgacattcaccaataacaacttgtcggttact |
275 |
Q |
| |
|
||||||||||||||| || || ||||| || |||| ||||| || ||||||| |||||| || ||||| ||| || |||||||||||| | | | | |
|
|
| T |
53459676 |
tgacaggtggatttgccatttccatgcatctaacaaatataacgtcacaagtgcttataaccacttgttgtcatcaacaaataacaacttggcagctgat |
53459577 |
T |
|
| Q |
276 |
cacatgactgaaatttggaacaaggaagtgcctttgaaaatcagtctctttgcttggcgcttgttacgtgatagattacttacaacggacaatttaatca |
375 |
Q |
| |
|
||||| ||||||||||| || |||||||||||||| ||| ||||||||||||||||||| || | ||| |||||||| |||| |||||||| | | |
|
|
| T |
53459576 |
cacataactgaaatttgaaataaggaagtgcctttaaaagtcagtctctttgcttggcgtctgcttcgtagtagattaccagcaacatacaatttagtta |
53459477 |
T |
|
| Q |
376 |
aaagacacattttacatccgaatgttcatttctgcgtggggcgatgcggcatgatagaagatgcaaaacacttatt |
451 |
Q |
| |
|
||||||| ||| |||| || |||| ||| | || ||||| |||| |||||| ||||||| ||| | |||||||| |
|
|
| T |
53459476 |
aaagacaaattatacaaccaaatgctcaagtttgtgtgggcggatgtggcatgttagaagacgcagagcacttatt |
53459401 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 74 - 119
Target Start/End: Complemental strand, 33759508 - 33759463
Alignment:
| Q |
74 |
tagcatgtggaactggattctgataatccaagaaaacgaaacatca |
119 |
Q |
| |
|
||||||||||||||||||||| ||||| ||||||||||||||||| |
|
|
| T |
33759508 |
tagcatgtggaactggattctaataataaaagaaaacgaaacatca |
33759463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 19 - 56
Target Start/End: Complemental strand, 33759549 - 33759512
Alignment:
| Q |
19 |
ttatcaacaaataattagtggtgttaaaaaccaacaaa |
56 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
33759549 |
ttatcaacaaataattagtggtgctaaaaaccaacaaa |
33759512 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0074 (Bit Score: 64; Significance: 9e-28; HSPs: 1)
Name: scaffold0074
Description:
Target: scaffold0074; HSP #1
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 357 - 464
Target Start/End: Original strand, 23307 - 23414
Alignment:
| Q |
357 |
acaacggacaatttaatcaaaagacacattttacatccgaatgttcatttctgcgtggggcgatgcggcatgatagaagatgcaaaacacttattcatct |
456 |
Q |
| |
|
|||| ||||||| |||||||||||||||||||| ||| ||||| ||| || |||||||| ||||||| ||||||||||||||||||||||||||| ||| |
|
|
| T |
23307 |
acaatggacaatctaatcaaaagacacattttatatctgaatgctcagttatgcgtgggtggatgcggtatgatagaagatgcaaaacacttattcctct |
23406 |
T |
|
| Q |
457 |
cttgtgat |
464 |
Q |
| |
|
|||||||| |
|
|
| T |
23407 |
cttgtgat |
23414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0432 (Bit Score: 61; Significance: 5e-26; HSPs: 1)
Name: scaffold0432
Description:
Target: scaffold0432; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 176 - 464
Target Start/End: Original strand, 8434 - 8722
Alignment:
| Q |
176 |
tgacaggtggatttggcacttgcatgcctccaacagttataatgttacaagtgtttataatcatctgttgacattcaccaataacaacttgtcggttact |
275 |
Q |
| |
|
|||||||||||||||||| || |||| ||||||| ||||| | ||||||| |||||| || ||||| ||| || |||||||||||| | | | | |
|
|
| T |
8434 |
tgacaggtggatttggcatttacatgtatccaacaaatataacttcacaagtgcttataaccacttgttgtcatcaacaaataacaacttggcagctgat |
8533 |
T |
|
| Q |
276 |
cacatgactgaaatttggaacaaggaagtgcctttgaaaatcagtctctttgcttggcgcttgttacgtgatagattacttacaacggacaatttaatca |
375 |
Q |
| |
|
||||| ||| ||||||| || |||||||||||||| ||| ||||||| ||||||||||| |||| || |||||||| ||||| |||||| || | | |
|
|
| T |
8534 |
cacataactaaaatttgaaataaggaagtgcctttaaaagtcagtctttttgcttggcgtctgttgtgtattagattaccaacaacagacaatctagtta |
8633 |
T |
|
| Q |
376 |
aaagacacattttacatccgaatgttcatttctgcgtggggcgatgcggcatgatagaagatgcaaaacacttattcatctcttgtgat |
464 |
Q |
| |
|
||||||| |||||||| || |||| | | || || ||||| |||| |||||||| ||||| |||||||||||||| |||| |||||| |
|
|
| T |
8634 |
aaagacaaattttacaacccaatgctaagttttgtgtgggcggatgtggcatgatggaagacgcaaaacacttatttttctcgtgtgat |
8722 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University