View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19475_low_16 (Length: 477)
Name: NF19475_low_16
Description: NF19475
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19475_low_16 |
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Alignment Details
Target: chr6 (Bit Score: 402; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 9 - 459
Target Start/End: Original strand, 3521659 - 3522109
Alignment:
| Q |
9 |
acatcatcactgacctcatttccaagcttaaattcatcattttcacccgcacccttttcgatttcggtatccaaatcagcttctttaccaccctcctcgc |
108 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
3521659 |
acatcatcactgacctcatttccaagctcaaattcatcattttcaccggcacccttttcgatttcggtatccaaatcagcttctttacaaccctcctcgc |
3521758 |
T |
|
| Q |
109 |
cgtctgtcgaaaagggtctgatgggaatgcttctaccaccataaaaattcaatctttgacacaaactaggacaaaaacgagattttatcaaatgggtcga |
208 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
3521759 |
cgtctgtcgaaaagggtctgatgggaatgcttctaccaccataaaaattcaatgtttgacacaaactaggacaaaaacgagattttattaaatgggtcga |
3521858 |
T |
|
| Q |
209 |
aaaatggcgaaaatggccatgaaattgagaatttgaagatgaactgtgtgtgtgattgaagagaagaggtttaagggttgaaaaggttcgnnnnnnncgt |
308 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
3521859 |
aaaatggcgaaaatggccatgaaattgtgaatttgaagatgaactgtgtgtgtgattgaagagaagaggtttaagggttgaaaaggttcgtttttttcgt |
3521958 |
T |
|
| Q |
309 |
gtgtataagaggaaaatcgatgaaattgaacctctagccattgaaattgataaaccgaattgaaaaggggtgtgtgaattcaaaaaggggtaaacattag |
408 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
3521959 |
gtgtataagaggaaaatcgatgaaattgaacctctagccattgaaattgataaaccgaattgaaaaggggtgtgtgaattcaaaagggggtaaacattag |
3522058 |
T |
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| Q |
409 |
aattagggtttgaaatatagaaaatgggagaaggagagtgaagagaggtta |
459 |
Q |
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| T |
3522059 |
aattagggtttgaaatatagaaaatgggagaaggagagtgaagagaggtta |
3522109 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 85; Significance: 3e-40; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 110 - 292
Target Start/End: Complemental strand, 7437082 - 7436901
Alignment:
| Q |
110 |
gtctgtcgaaaagggtctgatgggaatgcttctaccaccataaaaattcaatctttgacacaaactaggacaaaaacgagattttatcaaatgggtcg-a |
208 |
Q |
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|||||||||||||||||| ||||| | |||||||||| |||||||| ||| |||||||||||||| ||||||||||||||||||| |||||||||| | |
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| T |
7437082 |
gtctgtcgaaaagggtctcatgggta--cttctaccacaataaaaatccaaactttgacacaaacttagacaaaaacgagattttataaaatgggtcgta |
7436985 |
T |
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| Q |
209 |
aaaatggcgaaaatggccatgaaattgagaatttgaagatgaactgtgtgtgtgattgaagagaagaggtttaagggttgaaaa |
292 |
Q |
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| T |
7436984 |
aacactgtgaaaatggcagagaaattgggaatttggagatgaattatgtgtgtgattgaagagaagaggtttgagggttgaaaa |
7436901 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 129 - 292
Target Start/End: Original strand, 28562315 - 28562483
Alignment:
| Q |
129 |
atgggaatgcttctaccaccataaaaattcaatctttgacacaaacta----ggacaaaaacgagattttatcaaatgggtcgaaaaatggc-gaaaatg |
223 |
Q |
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||||| ||||||||||||| |||||||| |||||||||||||||| || ||||||| |||||||| ||| ||||||||||||||| |||| || |
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| T |
28562315 |
atgggcatgcttctaccacaataaaaatccaatctttgacacaaattaacttggacaaacacgagattatataaaatgggtcgaaaaaactatgaaactg |
28562414 |
T |
|
| Q |
224 |
gccatgaaattgagaatttgaagatgaactgtgtgtgtgattgaagagaagaggtttaagggttgaaaa |
292 |
Q |
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| T |
28562415 |
gcagtgaaattaggaatttggagatgaattatgtgtgtgattgaagagaagaggtttgagggttgaaaa |
28562483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 129 - 336
Target Start/End: Original strand, 37883786 - 37883998
Alignment:
| Q |
129 |
atgggaatgcttctaccaccataaaaattcaatctttgacacaaacta----ggacaaaaacgagattttatcaaatgggtcgaaaaatggc-gaaaatg |
223 |
Q |
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||||| ||||||||||||| ||||||||||||||||||||||||| || ||||||| |||||||| ||| ||||||||||||||| ||||||| |
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| T |
37883786 |
atgggcatgcttctaccacaataaaaattcaatctttgacacaaattaacttggacaaatacgagattatataaaatgggtcgaaaaaactatgaaaatg |
37883885 |
T |
|
| Q |
224 |
gccatgaaattgagaatttgaagatgaactgtgtgtgtgattgaagagaagaggtttaagggttgaaaaggttcgnnnnnnncgtgtgtataagaggaaa |
323 |
Q |
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|| ||||||| ||||||| ||||||| | |||||||||||||||||||||||||| ||||||||||| ||| | ||||||||| || |||| |
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| T |
37883886 |
gcagtgaaattaggaatttggagatgaattatgtgtgtgattgaagagaagaggtttgagggttgaaaaagtttgttttttgtgtgtgtataggaagaaa |
37883985 |
T |
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| Q |
324 |
atcgatgaaattg |
336 |
Q |
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||||||||||||| |
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| T |
37883986 |
atcgatgaaattg |
37883998 |
T |
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