View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19475_low_19 (Length: 466)
Name: NF19475_low_19
Description: NF19475
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19475_low_19 |
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Alignment Details
Target: chr7 (Bit Score: 408; Significance: 0; HSPs: 10)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 4 - 450
Target Start/End: Complemental strand, 4783063 - 4782616
Alignment:
| Q |
4 |
aggaacagagattagagttatcaatgttatcaacaacccaaattcgtccatcaaaggcagtagtgtttgttgaggagccacaactgatggctaaactgta |
103 |
Q |
| |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4783063 |
aggaaaagagattagagttatcaatgttatcaacaacccaaattcgtccatcaaaggcagtagtgtttgttgaggagccacaactgatggctaaactgta |
4782964 |
T |
|
| Q |
104 |
atcagggttgtatgaactagcaattagaggaaataataggtgaaggaaaaggaagtgtagaagggtggtgttacattgaaatttgtggtttctggagttt |
203 |
Q |
| |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4782963 |
atcagggttgtatgaaatagcaattagaggaaataataggtgaaggaaaaggaagtgtagaagggtggtgttacattgaaatttgtggtttctggagttt |
4782864 |
T |
|
| Q |
204 |
gccatatttgtgtgtaaagcttgttgttgttagagaagaatgtgaagagtaga-nnnnnnnncttcttgtgatgacttttgagacactacagattgcatg |
302 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
4782863 |
gccatatttgtgtgtaaagcttgttgttgttagagaagaatgtgaagagtagatttttttttcttcttgtgatgacttttgagacactacagattgcatg |
4782764 |
T |
|
| Q |
303 |
tatttattgttatattcattgagaagcaggaaggaaatttctacgaaaccacactagagactattcatggaatcaactactttgaaatgtcaaaggatca |
402 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4782763 |
tatttattgttatattcattgagaagcaggaaggaaatttctacgaaaccacactagagactattcatggaatcaactactttgaaatgtcaaaggatca |
4782664 |
T |
|
| Q |
403 |
ctatgggaatcctttaggatcacataattatggttgtggataggaaac |
450 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4782663 |
ctatgggaatcctttaggatcacataattatggttgtggataggaaac |
4782616 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 4 - 448
Target Start/End: Complemental strand, 4815492 - 4815044
Alignment:
| Q |
4 |
aggaacagagattagagttatcaatgttatcaacaacccaaattcgtccatcaaaggcagtagtgtttgttgaggagccacaactgatggctaaactgta |
103 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4815492 |
aggaaaagagattagagttatcaatgttatcaacaacccaaattcgtccatcaaaggcagtagtgtttgttgaggagccacaactgatggctaaactgta |
4815393 |
T |
|
| Q |
104 |
atcagggttgtatgaactagcaattagaggaaataataggtgaaggaaaaggaagtgtagaagggtggtgttacattgaaatttgtggtttctggagttt |
203 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4815392 |
atcagggttgtatgaactagcaattagaggaaataataggtgaaggaaaaggaagtgtagaagggtggtgttacattgaaatttgtggtttctggagttt |
4815293 |
T |
|
| Q |
204 |
gccatatttgtgtgtaaagcttgttgttgttagagaagaatgtgaagagtaga-nnnnnnnncttcttgtgatgacttttgagacactacagattgcatg |
302 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| |||||||| |
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|
| T |
4815292 |
gccatatttgtgtgtaaagcttgttgttgttagagaagaatgtgaagagtagatttatttttcttcctgtgatgacttttgagacactacaaattgcatg |
4815193 |
T |
|
| Q |
303 |
tatttattgttatattcattgagaagcaggaaggaaatttctacgaaaccacactagagactattcatggaatcaactactttgaaat-gtcaaaggatc |
401 |
Q |
| |
|
||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||| |
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|
| T |
4815192 |
tatttattgttattttcattgagaggcaggaaggaaatttctacgaaaccacactagagactactcatggaatcaactactttgaaatggtcaaaggatc |
4815093 |
T |
|
| Q |
402 |
actatgggaatc--ctttaggatcacataattatggttgtggataggaa |
448 |
Q |
| |
|
|||||| ||||| |||||||||||||||||| |||||||||||||||| |
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|
| T |
4815092 |
actatgagaatccgctttaggatcacataattgtggttgtggataggaa |
4815044 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 10 - 133
Target Start/End: Complemental strand, 4711309 - 4711186
Alignment:
| Q |
10 |
agagattagagttatcaatgttatcaacaacccaaattcgtccatcaaaggcagtagtgtttgttgaggagccacaactgatggctaaactgtaatcagg |
109 |
Q |
| |
|
||||||| ||||||||||| |||||| ||||||||||||| | ||| ||||||||||||||||||||| |||||||| ||||||||||| |||||||||| |
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|
| T |
4711309 |
agagatttgagttatcaatattatcaccaacccaaattcgactatctaaggcagtagtgtttgttgagaagccacaattgatggctaaattgtaatcagg |
4711210 |
T |
|
| Q |
110 |
gttgtatgaactagcaattagagg |
133 |
Q |
| |
|
||||||||| |||||| |||||| |
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|
| T |
4711209 |
gttgtatgagttagcaactagagg |
4711186 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 10 - 118
Target Start/End: Complemental strand, 4845237 - 4845129
Alignment:
| Q |
10 |
agagattagagttatcaatgttatcaacaacccaaattcgtccatcaaaggcagtagtgtttgttgaggagccacaactgatggctaaactgtaatcagg |
109 |
Q |
| |
|
||||||| ||||||||||| |||||| ||| |||||||||| ||| |||||| | ||||||||||||| |||||| ||||||||||| |||||||||| |
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| T |
4845237 |
agagatttgagttatcaatattatcaccaatccaaattcgtttatctaaggcaacattgtttgttgaggaaccacaattgatggctaaattgtaatcagg |
4845138 |
T |
|
| Q |
110 |
gttgtatga |
118 |
Q |
| |
|
||||||||| |
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|
| T |
4845137 |
gttgtatga |
4845129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 20 - 118
Target Start/End: Original strand, 4637734 - 4637832
Alignment:
| Q |
20 |
gttatcaatgttatcaacaacccaaattcgtccatcaaaggcagtagtgtttgttgaggagccacaactgatggctaaactgtaatcagggttgtatga |
118 |
Q |
| |
|
||||| ||| |||||| |||||||||||||| ||| ||||||||| ||| ||| ||||||||||| ||||||||||| ||||||||||||||||||| |
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|
| T |
4637734 |
gttattaatattatcaccaacccaaattcgtttatctaaggcagtattgtcggttaaggagccacaattgatggctaaattgtaatcagggttgtatga |
4637832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 20 - 117
Target Start/End: Original strand, 4864805 - 4864899
Alignment:
| Q |
20 |
gttatcaatgttatcaacaacccaaattcgtccatcaaaggcagtagtgtttgttgaggagccacaactgatggctaaactgtaatcagggttgtatg |
117 |
Q |
| |
|
||||||||| |||||| |||||||||||||| ||| |||| |||| ||||||||||||||||||| ||||||||||||| |||||||| |||||| |
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|
| T |
4864805 |
gttatcaatattatcaccaacccaaattcgtttatctaaggtagta---tttgttgaggagccacaaccgatggctaaactgaaatcagggctgtatg |
4864899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 20 - 96
Target Start/End: Original strand, 4644572 - 4644648
Alignment:
| Q |
20 |
gttatcaatgttatcaacaacccaaattcgtccatcaaaggcagtagtgtttgttgaggagccacaactgatggcta |
96 |
Q |
| |
|
||||||| | |||||| ||||||||||||| | ||| |||||||||||||| ||||||||||||||||| ||||||| |
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|
| T |
4644572 |
gttatcattattatcaccaacccaaattcgactatctaaggcagtagtgttcgttgaggagccacaactaatggcta |
4644648 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 20 - 142
Target Start/End: Original strand, 4654376 - 4654498
Alignment:
| Q |
20 |
gttatcaatgttatcaacaacccaaattcgtccatcaaaggcagtagtgtttgttgaggagccacaactgatggctaaactgtaatcagggttgtatgaa |
119 |
Q |
| |
|
||||||||| || ||| ||| |||||||||| ||| |||| |||||||| |||| |||||||||| ||| |||||| ||||||||||||||||||| |
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|
| T |
4654376 |
gttatcaatattctcaccaatccaaattcgtttatctaaggtagtagtgtctgttagggagccacaatcgatagctaaattgtaatcagggttgtatgag |
4654475 |
T |
|
| Q |
120 |
ctagcaattagaggaaataatag |
142 |
Q |
| |
|
|||||||||||| || ||||| |
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|
| T |
4654476 |
taagcaattagagggaacaatag |
4654498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 63 - 142
Target Start/End: Complemental strand, 4696353 - 4696274
Alignment:
| Q |
63 |
gtagtgtttgttgaggagccacaactgatggctaaactgtaatcagggttgtatgaactagcaattagaggaaataatag |
142 |
Q |
| |
|
||||||| || ||||||||||||| ||||||||||| ||||| ||||| |||||| |||||| |||||| || ||||| |
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|
| T |
4696353 |
gtagtgtctgatgaggagccacaattgatggctaaattgtaaatagggtcgtatgaggtagcaactagagggaacaatag |
4696274 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 142
Target Start/End: Original strand, 4663576 - 4663698
Alignment:
| Q |
20 |
gttatcaatgttatcaacaacccaaattcgtccatcaaaggcagtagtgtttgttgaggagccacaactgatggctaaactgtaatcagggttgtatgaa |
119 |
Q |
| |
|
||||||| | |||||| |||||||||||| | | || || ||||| ||||| | ||| |||||||||||||||||| ||||| ||||||||||| |
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|
| T |
4663576 |
gttatcattattatcaccaacccaaattccttcgtccgagtcagtattgtttatatcggaaccacaactgatggctaaattgtaaattgggttgtatgag |
4663675 |
T |
|
| Q |
120 |
ctagcaattagaggaaataatag |
142 |
Q |
| |
|
||||||||||||| || ||||| |
|
|
| T |
4663676 |
gtagcaattagagggaacaatag |
4663698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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