View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19475_low_20 (Length: 465)
Name: NF19475_low_20
Description: NF19475
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19475_low_20 |
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Alignment Details
Target: chr7 (Bit Score: 374; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 63 - 448
Target Start/End: Complemental strand, 29068199 - 29067814
Alignment:
| Q |
63 |
aatcttagtttcgttgatatatcaaaccataggttagtcagagccttgccttcttcactaagaaatgtttcagaaaatagagttgttaagagtaatggaa |
162 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29068199 |
aatcttagtttcgttgatatatcaaaccgtaggttagtcagagccttgccttcttcactaagaaatgtttcagaaaatagagttgttaagagtaatggaa |
29068100 |
T |
|
| Q |
163 |
actgtttatcatggagtgcgcagcatcagcatgcagtatcatattgtactgagactcgtgggaagacgaaattgtaccaagtccaaaattttgttggcgt |
262 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29068099 |
actgtttatcatggagtgcgcagcatcagcatgcagtatcatattgtaccgagactcgtgggaagacgaaattgtaccaagtccaaaattttgttggcgt |
29068000 |
T |
|
| Q |
263 |
cgttgttggaattctagttatcattgtggatttgggtttatgcattgttgttaattactcgagggggatttgagagtggcacctattgcacagatcagtt |
362 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29067999 |
cgttgttggaattctagttatcattgtggatttgggtttatgcattgttgttaattactcgagggggatttgagagtggcacctattgcacagatcagtt |
29067900 |
T |
|
| Q |
363 |
caagactcagcagggttctcatccgagcttattgcaaaggcaagtacgtcatcttcattcatgaggagattaagggatatggtaaa |
448 |
Q |
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| T |
29067899 |
caagactcagcagggttctcattcgagcttattgcaaaggcaagtacgtcatcttcattcatgaggagattaagggatatggtaaa |
29067814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 29068717 - 29068657
Alignment:
| Q |
1 |
acatacttttattgatatagctcaaatccaaaatagaatatttgcctttatatcaatactc |
61 |
Q |
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| T |
29068717 |
acatacttttattgatatagctcaaatcgaaaatagaatatttgcctttatatcaatactc |
29068657 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 134; Significance: 1e-69; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 1 - 138
Target Start/End: Original strand, 11854706 - 11854843
Alignment:
| Q |
1 |
acatacttttattgatatagctcaaatccaaaatagaatatttgcctttatatcaatactcaaatcttagtttcgttgatatatcaaaccataggttagt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
11854706 |
acatacttttattgatatagctcaaatccaaaatagaatatttgcctttatatcaatactcaaatcttagtttcgttgatatatcaaaccagaggttagt |
11854805 |
T |
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| Q |
101 |
cagagccttgccttcttcactaagaaatgtttcagaaa |
138 |
Q |
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| T |
11854806 |
cagagccttgccttcttcactaagaaatgtttcagaaa |
11854843 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 63 - 408
Target Start/End: Complemental strand, 34004090 - 34003727
Alignment:
| Q |
63 |
aatcttagtttcgttgatatatcaaaccataggttagtcagagccttgccttcttcactaagaaatgtttcagaaaatagagttgttaagagtaatggaa |
162 |
Q |
| |
|
||||||||||| ||||| |||||||| ||||| || | |||||||||||| ||| ||||| ||||| ||||||||||||| ||| ||||| |||||| |
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| T |
34004090 |
aatcttagttttgttgacatatcaaataataggctaattggagccttgccttattctctaagcaatgtgtcagaaaatagagctgtggagagtgatggaa |
34003991 |
T |
|
| Q |
163 |
actgtttatcatggagtgcgcagcatcagcatgcagtatcatattgtactgagactcgtgggaagacgaaattgtaccaagtccaaaattttgttggcgt |
262 |
Q |
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|||||||||| | | | ||||||||||||||||||||| ||||| | || ||| || |||| ||||| | ||| ||| || ||||||||| || |
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| T |
34003990 |
actgtttatctggtactttgcagcatcagcatgcagtatcttattgcgcagaagctcctgataagaagaaatcgaaccgagttggaatttttgttggtgt |
34003891 |
T |
|
| Q |
263 |
cgttgttggaattctagttatcattgtggatttgggtttatgcattgttgtta------------attactcgagggggatttgagagtggcacctattg |
350 |
Q |
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| ||||||||||||| ||||||||||| ||| ||||||||||| ||||||| ||||||| || |||||| |||| |||||||||| |
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| T |
34003890 |
cattgttggaattcttgttatcattgtcctttttggtttatgcatcgttgttatatgtaagaggtattactctagagggattgcagagcagcacctattg |
34003791 |
T |
|
| Q |
351 |
cacagatcagttcaag------actcagcagggttctcatccgagcttattgcaaaggcaagta |
408 |
Q |
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|| | ||||||||||| |||||||||||||||||| |||||||||||||| ||||||| |
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| T |
34003790 |
cataaatcagttcaagatagctactcagcagggttctcatgtgagcttattgcaaatgcaagta |
34003727 |
T |
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