View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19475_low_21 (Length: 464)
Name: NF19475_low_21
Description: NF19475
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19475_low_21 |
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| [»] chr6 (1 HSPs) |
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| [»] scaffold0370 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 339; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 80 - 464
Target Start/End: Original strand, 23507586 - 23507970
Alignment:
| Q |
80 |
tatgcgtgcttgaagagggacactaccatgctcaaaaagagtaatgatgttatcaaaatatagtatcttctaagacactaaatgatgttttattcctcga |
179 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23507586 |
tatgcgtgcttgaagagggacactaccatgctcaaaaagagtaatgatgttatcaaaatatagtatcttctaagacactaaatgatgttttattcctcga |
23507685 |
T |
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| Q |
180 |
cataggctaaataaggtaatcaaagcatttcatgggaacatgctatatatagctcttttctgttttgattcaaaaaaggtctttactcctttaataattt |
279 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23507686 |
cataggctaaataaggtaatcaaagcatttcatgggaacatgctatatatagctcttttctgttttgattcaaaaaaggtctttactcctttaataattt |
23507785 |
T |
|
| Q |
280 |
ttgtactatgttgagnnnnnnnctaagcaatgtattgttttataaaattcatgtaccgacaaatacaaaatcttacatgatnnnnnnngaaaagaaatga |
379 |
Q |
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| T |
23507786 |
ttgtactatattgagaaaaaaactaagcaatgtattgttttataaaattcatgtaccgacaaatacaaaatcttacatgataaaaaaagaaaagaaatga |
23507885 |
T |
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| Q |
380 |
taatgggtgccctaagggtactctttcacaaccttaaatagtaagtttttataaaaattaagagcaaatagtcactttagtctct |
464 |
Q |
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| T |
23507886 |
taatgggtgccctaagggtactctttcacaaccttaaatagtaagtttttataaaaattaagagcaaatagtcactttagtctct |
23507970 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 386 - 438
Target Start/End: Complemental strand, 16942507 - 16942455
Alignment:
| Q |
386 |
gtgccctaagggtactctttcacaaccttaaatagtaagtttttataaaaatt |
438 |
Q |
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| T |
16942507 |
gtgccctaagggcactctttaacaaccttaaatagcaagtttttataaaaatt |
16942455 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 386 - 438
Target Start/End: Complemental strand, 17013172 - 17013120
Alignment:
| Q |
386 |
gtgccctaagggtactctttcacaaccttaaatagtaagtttttataaaaatt |
438 |
Q |
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| T |
17013172 |
gtgccctaagggcactctttaacaaccttaaatagcaagtttttataaaaatt |
17013120 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 386 - 429
Target Start/End: Original strand, 15120016 - 15120059
Alignment:
| Q |
386 |
gtgccctaagggtactctttcacaaccttaaatagtaagttttt |
429 |
Q |
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| T |
15120016 |
gtgccctaagggcactctttaacaaccttaaatagtaagctttt |
15120059 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 392 - 438
Target Start/End: Complemental strand, 36643711 - 36643665
Alignment:
| Q |
392 |
taagggtactctttcacaaccttaaatagtaagtttttataaaaatt |
438 |
Q |
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| T |
36643711 |
taagggcactcttcgacaaccttaaatagtaagtttttatagaaatt |
36643665 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 373 - 429
Target Start/End: Original strand, 28572531 - 28572587
Alignment:
| Q |
373 |
gaaatgataatgggtgccctaagggtactctttcacaaccttaaatagtaagttttt |
429 |
Q |
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| T |
28572531 |
gaaatgttaacgagtgccctaaggatactttttaacaactttaaatagtaagttttt |
28572587 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 397 - 440
Target Start/End: Complemental strand, 50248032 - 50247989
Alignment:
| Q |
397 |
gtactctttcacaaccttaaatagtaagtttttataaaaattaa |
440 |
Q |
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| T |
50248032 |
gtactctttaacaaccttaaatagtaagtttttatagaaattaa |
50247989 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 373 - 438
Target Start/End: Complemental strand, 34285485 - 34285420
Alignment:
| Q |
373 |
gaaatgataatgggtgccctaagggtactctttcacaaccttaaatagtaagtttttataaaaatt |
438 |
Q |
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| T |
34285485 |
gaaatgttaacgagtgctctaagggtactctttaataactttaaatagtaaatttttataaaaatt |
34285420 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 409 - 438
Target Start/End: Original strand, 46895919 - 46895948
Alignment:
| Q |
409 |
aaccttaaatagtaagtttttataaaaatt |
438 |
Q |
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| T |
46895919 |
aaccttaaatagtaagtttttataaaaatt |
46895948 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0370 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0370
Description:
Target: scaffold0370; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 392 - 434
Target Start/End: Complemental strand, 516 - 474
Alignment:
| Q |
392 |
taagggtactctttcacaaccttaaatagtaagtttttataaa |
434 |
Q |
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| T |
516 |
taagggcactctttaacaaccttaaatagtaagtttttgtaaa |
474 |
T |
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