View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19475_low_22 (Length: 462)
Name: NF19475_low_22
Description: NF19475
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19475_low_22 |
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Alignment Details
Target: chr4 (Bit Score: 386; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 1 - 457
Target Start/End: Original strand, 46939266 - 46939742
Alignment:
| Q |
1 |
cggtttggtccaattctataaacactagttacaagatcatgctttag-tgtctccacagtcggataaaactatgattgattttgcatcattagtatttga |
99 |
Q |
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| T |
46939266 |
cggtttggtccaattctataaacactagttacaagatcatgctttaggtgtctccacagtcggataaaactatgattgattttgcatcattagtatttga |
46939365 |
T |
|
| Q |
100 |
ctgcgattatgtgcaatattatagatttcaaatctaaaatcttgttgacatt-aaatactaaattagttttgatgaagtgaaatgaacaaactaacatct |
198 |
Q |
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| T |
46939366 |
ctgcgattatgtgcaatattatagattccaaatctaaaattttgttgacatttaaatactaaattagttttgatgcagtgaaatgaacaaactaacatct |
46939465 |
T |
|
| Q |
199 |
taattaat------------------atataaatagagatgtgaaaattaaagcataattagcatataccttcttaatgttatgagcaatgtgtttggag |
280 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46939466 |
taattaatttaatggtaataataaatatataaatagagatgtgaaaattaaagcataattagcatataccttcttaatgttatgagcaatgtgtttggag |
46939565 |
T |
|
| Q |
281 |
ctaaactcctcaagactatcatatgtccttcttgcacaacgaaaagcatgcacttgcatgaaacttggcatgtctgagaccaaaaccttcacttgaagtt |
380 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46939566 |
ctaaactcctcaagactatcatatgtccttcttgcacaacgaaaagcatgcacttgcatgaaacttggcatgtctgagaccaaaaccttcacttgaagtt |
46939665 |
T |
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| Q |
381 |
tttcaataacagaagacaatgtttcaatatgggacactgattttcttgcctcaacaaatttacctacctttgcttct |
457 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
46939666 |
tttcaataacagaagacaatgtttcaatatgggacactgattttcttgcctcaacaaatttacctaccttttcttct |
46939742 |
T |
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