View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19475_low_25 (Length: 447)
Name: NF19475_low_25
Description: NF19475
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19475_low_25 |
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Alignment Details
Target: chr4 (Bit Score: 391; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 4 - 430
Target Start/End: Original strand, 53673944 - 53674370
Alignment:
| Q |
4 |
atgtccaagaatatccaactccataaggaattctttttccttgtttggatctttgttgtctttggctaatctcttcacagcaatggtttttccattacaa |
103 |
Q |
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| T |
53673944 |
atgtccaataatacccaactccataaggaattctttttccttgtttggatctttgttgtctttggctaatctcttcacagcaatggtttctccattacaa |
53674043 |
T |
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| Q |
104 |
agatcacctttgtatacctctgagtaccctcctcttccaactaaattatctattttcaaagaaaccaaaaatgaatgagtatattagaaacctcaattca |
203 |
Q |
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| T |
53674044 |
agatcacctttgtatacttctgagtaccctcctcttccaactaaattatctattttcaaagaaacaaaaaatgaatgagtatattagaaacctcaattca |
53674143 |
T |
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| Q |
204 |
atgtttcatatgacattaaaaataagattaattatataccttggtgaaagtcattagtagcatttgatatattttcatagctgaagcacttcaacaaggg |
303 |
Q |
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| T |
53674144 |
atgtttcatatgacattaaaaataacattaataatataccttggtgaaagtcattagtagcatttgatatattttcatagctgaagcaattcaacaaggg |
53674243 |
T |
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| Q |
304 |
ttgatgtttttcaattttggacatgttgaaggtttttattctgaatggtgaaccaagaaacgaaattatgaacctgaatgataattgtgattttctctta |
403 |
Q |
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| T |
53674244 |
ttgatgtttttcaattttggacatgttgaaggtttttattctgaatggtgaaccaagaaacgatattatgaacctgaatgataattgtgattttctctta |
53674343 |
T |
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| Q |
404 |
atcttaggaccagatgaaggtgtatat |
430 |
Q |
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| T |
53674344 |
atcttaggaccagatgaaggtgtatat |
53674370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 35 - 152
Target Start/End: Original strand, 53671329 - 53671451
Alignment:
| Q |
35 |
tctttttccttgtttggatctttgttgtctttggctaatctcttcacagcaatggtttttccattacaaagatcacctttgtatacctctgagta----- |
129 |
Q |
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| T |
53671329 |
tctttttccttgtttggatctttgttgtcttaggctaacctcttcacaacaatggtttctccattacaaagatcaccattgtataattctgagtaacctc |
53671428 |
T |
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| Q |
130 |
ccctcctcttccaactaaattat |
152 |
Q |
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| T |
53671429 |
ccctcctcttccaaccaaattat |
53671451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 190 - 314
Target Start/End: Original strand, 53671717 - 53671842
Alignment:
| Q |
190 |
gaaacctcaattcaatgtttcatatgacatt-aaaaataagattaattatataccttggtgaaagtcattagtagcatttgatatattttcatagctgaa |
288 |
Q |
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| T |
53671717 |
gaaacatcaattcaatgttttctacgaccttgaaaaataacactgatcataaaccttggtgacagtgatttgcagcattggaaatattttcacagctgaa |
53671816 |
T |
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| Q |
289 |
gcacttcaacaagggttgatgttttt |
314 |
Q |
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| T |
53671817 |
gcactatagcaaaggttgatgctttt |
53671842 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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