View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19475_low_26 (Length: 446)
Name: NF19475_low_26
Description: NF19475
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19475_low_26 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 337; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 38 - 446
Target Start/End: Original strand, 36145304 - 36145703
Alignment:
| Q |
38 |
gtccaatatcaagatagccccaaagctttttgtgctatggcttgcccgtatttttctatatccaaagtaactcataattcattcgagagatgtagttcaa |
137 |
Q |
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| T |
36145304 |
gtccaatatcaagatagccccaaagctttttgtgctatggcttgcccgtatttttctatatccaaagtaagtcataatttgttcgagagatgtagttcaa |
36145403 |
T |
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| Q |
138 |
tggttagagcttaactttataaaaatggattgaaaataatagattatttcaatcacaaattcaaaagattaatagcatgtttgattctgatttcttgtta |
237 |
Q |
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| T |
36145404 |
tggttagagcttaactttataaaaatggattgaaaataatagattatttcaatcacaaattcaaaagattaata---------attctgatttcttgtta |
36145494 |
T |
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| Q |
238 |
caaatatattagcgttgcaaagacgacgattcctccgcaattttaagaagttgtatacccaaatttccccctaaacacatgtctagattcactccaaagt |
337 |
Q |
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| T |
36145495 |
caaatatattagcgttgcaaagacgacgattcctccgcaattttaagaagttttatacccaaattttcccctaaacacatgtctagattcactccaacct |
36145594 |
T |
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| Q |
338 |
gggaacaaaaacttcctaagaaaatgttagaaagtcttgaattcaaagccgattgcataaagagaaaaggaaatcaaagctgaatataattcttatacga |
437 |
Q |
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| T |
36145595 |
gggaacaaaaactccccaagaaaatgttagaaagtcttgaattcaaagccgattgcataaagagaaaaggaaatcaaagctgaatataattctaatacga |
36145694 |
T |
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Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 190 - 224
Target Start/End: Complemental strand, 26531332 - 26531298
Alignment:
| Q |
190 |
tcacaaattcaaaagattaatagcatgtttgattc |
224 |
Q |
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| T |
26531332 |
tcacaaattcaaaagattaatagcctgtttgattc |
26531298 |
T |
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