View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19475_low_28 (Length: 443)

Name: NF19475_low_28
Description: NF19475
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19475_low_28
NF19475_low_28
[»] chr4 (4 HSPs)
chr4 (14-427)||(32000854-32001267)
chr4 (14-427)||(31941895-31942308)
chr4 (213-424)||(32003917-32004128)
chr4 (45-114)||(36246545-36246614)
[»] chr7 (2 HSPs)
chr7 (47-114)||(2950124-2950191)
chr7 (198-246)||(28944732-28944780)
[»] chr2 (1 HSPs)
chr2 (45-100)||(37881306-37881361)
[»] chr5 (1 HSPs)
chr5 (14-139)||(18478951-18479076)
[»] chr3 (2 HSPs)
chr3 (45-82)||(20732617-20732654)
chr3 (45-82)||(20740353-20740390)
[»] chr8 (3 HSPs)
chr8 (48-84)||(9622097-9622133)
chr8 (48-78)||(7195709-7195739)
chr8 (45-90)||(39916910-39916955)
[»] chr1 (2 HSPs)
chr1 (38-77)||(27632581-27632620)
chr1 (26-81)||(45594286-45594341)
[»] chr6 (1 HSPs)
chr6 (197-255)||(3912013-3912071)


Alignment Details
Target: chr4 (Bit Score: 414; Significance: 0; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 14 - 427
Target Start/End: Original strand, 32000854 - 32001267
Alignment:
Q  14 agatggtcagcaatagcagcacaacttccaagaagaacagacaatgaaatcaagaactactggaacacacacctcaagaaaagactaacaagaatgggaa 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32000854 agatggtcagcaatagcagcacaacttccaagaagaacagacaatgaaatcaagaactactggaacacacacctcaagaaaagactaacaagaatgggaa 32000953  T
Q  114 tagacccaacaactcacaaaccaaaacaggatcattcacctggaagttccacttctcagtacaccaaagactcagctaacctcagtcacatggctcaatg 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32000954 tagacccaacaactcacaaaccaaaacaggatcattcacctggaagttccacttctcagtacaccaaagactcagctaacctcagtcacatggctcaatg 32001053  T
Q  214 ggagagtgctcgtttggaagcagaagcaagacttgttagagaaaccaataaactgaaagttcaaagacaacttgagtttgaatcctccaaaccacagcca 313  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32001054 ggagagtgctcgtttggaagcagaagcaagacttgttagagaaaccaataaactgaaagttcaaagacaacttgagtttgaatcctccaaaccacagcca 32001153  T
Q  314 cctgcaagactttttcttaacaaaatcactccactcattcaaccttcacttccaccttgtcttgatattctcaaagcatggcaaagttcatggtccaaac 413  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32001154 cctgcaagactttttcttaacaaaatcactccactcattcaaccttcacttccaccttgtcttgatattctcaaagcatggcaaagttcatggtccaaac 32001253  T
Q  414 caacaacaaaagat 427  Q
    ||||||||||||||    
T  32001254 caacaacaaaagat 32001267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 14 - 427
Target Start/End: Original strand, 31941895 - 31942308
Alignment:
Q  14 agatggtcagcaatagcagcacaacttccaagaagaacagacaatgaaatcaagaactactggaacacacacctcaagaaaagactaacaagaatgggaa 113  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31941895 agatggtcagcaatagcagctcaacttccaagaagaacagacaatgaaatcaagaactactggaacacacacctcaagaaaagactaacaagaatgggaa 31941994  T
Q  114 tagacccaacaactcacaaaccaaaacaggatcattcacctggaagttccacttctcagtacaccaaagactcagctaacctcagtcacatggctcaatg 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31941995 tagacccaacaactcacaaaccaaaacaggatcattcacctggaagttccacttctcagtacaccaaagactcagctaacctcagtcacatggctcaatg 31942094  T
Q  214 ggagagtgctcgtttggaagcagaagcaagacttgttagagaaaccaataaactgaaagttcaaagacaacttgagtttgaatcctccaaaccacagcca 313  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31942095 ggagagtgctcgtttggaagcagaagcaagacttgttagagaaaccaataaactgaaagttcaaagacaacttgagtttgaatcctccaaaccacagcca 31942194  T
Q  314 cctgcaagactttttcttaacaaaatcactccactcattcaaccttcacttccaccttgtcttgatattctcaaagcatggcaaagttcatggtccaaac 413  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31942195 cctgcaagactttttcttaacaaaatcactccactcattcaaccttcacttccaccttgtcttgatattctcaaagcatggcaaagttcatggtccaaac 31942294  T
Q  414 caacaacaaaagat 427  Q
    ||||||||||||||    
T  31942295 caacaacaaaagat 31942308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 136; E-Value: 9e-71
Query Start/End: Original strand, 213 - 424
Target Start/End: Original strand, 32003917 - 32004128
Alignment:
Q  213 gggagagtgctcgtttggaagcagaagcaagacttgttagagaaaccaataaactgaaagttcaaagacaacttgagtttgaatcctccaaaccacagcc 312  Q
    |||| |||||||||||||||||| |||||||||||||||||||||| || ||| | |||||||||||||||||| | |||||||||||||||||||| |     
T  32003917 gggaaagtgctcgtttggaagcaaaagcaagacttgttagagaaactaacaaaataaaagttcaaagacaactttaatttgaatcctccaaaccacaaca 32004016  T
Q  313 acctgcaagactttttcttaacaaaatcactccactcattcaaccttcacttccaccttgtcttgatattctcaaagcatggcaaagttcatggtccaaa 412  Q
    ||||||||||||||| || ||||||||||| ||||||||||||||||||||||| | || |||||||||||| ||||||||| |||||||||||||||||    
T  32004017 acctgcaagacttttcctcaacaaaatcacaccactcattcaaccttcacttcccctttctcttgatattctaaaagcatggtaaagttcatggtccaaa 32004116  T
Q  413 ccaacaacaaaa 424  Q
    | ||||||||||    
T  32004117 ctaacaacaaaa 32004128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 45 - 114
Target Start/End: Original strand, 36246545 - 36246614
Alignment:
Q  45 gaagaacagacaatgaaatcaagaactactggaacacacacctcaagaaaagactaacaagaatgggaat 114  Q
    ||||||||||||||||||||||||| || |||||||| ||| | | |||||||||   ||||||||||||    
T  36246545 gaagaacagacaatgaaatcaagaattattggaacactcacattaggaaaagactcttaagaatgggaat 36246614  T

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Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 47 - 114
Target Start/End: Original strand, 2950124 - 2950191
Alignment:
Q  47 agaacagacaatgaaatcaagaactactggaacacacacctcaagaaaagactaacaagaatgggaat 114  Q
    |||||||| ||||||||||||||||| ||||||||||| || ||||||||| |||| | |||||||||    
T  2950124 agaacagataatgaaatcaagaactattggaacacacatcttaagaaaagattaaccaaaatgggaat 2950191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 198 - 246
Target Start/End: Complemental strand, 28944780 - 28944732
Alignment:
Q  198 gtcacatggctcaatgggagagtgctcgtttggaagcagaagcaagact 246  Q
    |||||||||||||||||||||||||  |  | |||||||||||||||||    
T  28944780 gtcacatggctcaatgggagagtgcaaggcttgaagcagaagcaagact 28944732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 45 - 100
Target Start/End: Complemental strand, 37881361 - 37881306
Alignment:
Q  45 gaagaacagacaatgaaatcaagaactactggaacacacacctcaagaaaagacta 100  Q
    ||||||||||||||||||| ||||||||||||||||| ||| | | ||||||||||    
T  37881361 gaagaacagacaatgaaataaagaactactggaacacgcacattaggaaaagacta 37881306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 14 - 139
Target Start/End: Original strand, 18478951 - 18479076
Alignment:
Q  14 agatggtcagcaatagcagcacaacttccaagaagaacagacaatgaaatcaagaactactggaacacacacctcaagaaaagactaacaagaatgggaa 113  Q
    ||||||||  |||||||||| |  || ||||| |||||||| |||||||| |||||  | |||||||   || ||||||||||||| |  |||||||| |    
T  18478951 agatggtccacaatagcagctctcctgccaaggagaacagataatgaaataaagaatcattggaacattaacatcaagaaaagactcatcagaatgggga 18479050  T
Q  114 tagacccaacaactcacaaaccaaaa 139  Q
    |||| || || |||||||||||||||    
T  18479051 tagatcccaccactcacaaaccaaaa 18479076  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 45 - 82
Target Start/End: Complemental strand, 20732654 - 20732617
Alignment:
Q  45 gaagaacagacaatgaaatcaagaactactggaacaca 82  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  20732654 gaagaacagacaatgaaataaagaactactggaacaca 20732617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 45 - 82
Target Start/End: Complemental strand, 20740390 - 20740353
Alignment:
Q  45 gaagaacagacaatgaaatcaagaactactggaacaca 82  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  20740390 gaagaacagacaatgaaataaagaactactggaacaca 20740353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 48 - 84
Target Start/End: Original strand, 9622097 - 9622133
Alignment:
Q  48 gaacagacaatgaaatcaagaactactggaacacaca 84  Q
    |||||||||||||||| ||||||||||||||||||||    
T  9622097 gaacagacaatgaaataaagaactactggaacacaca 9622133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 48 - 78
Target Start/End: Original strand, 7195709 - 7195739
Alignment:
Q  48 gaacagacaatgaaatcaagaactactggaa 78  Q
    |||||||||||||||||||||||||||||||    
T  7195709 gaacagacaatgaaatcaagaactactggaa 7195739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 45 - 90
Target Start/End: Original strand, 39916910 - 39916955
Alignment:
Q  45 gaagaacagacaatgaaatcaagaactactggaacacacacctcaa 90  Q
    |||||||||||||||| ||||||||||| |||||||| ||| ||||    
T  39916910 gaagaacagacaatgagatcaagaactattggaacactcacatcaa 39916955  T

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Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 38 - 77
Target Start/End: Complemental strand, 27632620 - 27632581
Alignment:
Q  38 cttccaagaagaacagacaatgaaatcaagaactactgga 77  Q
    |||||| |||||||||||||||||||||||||||| ||||    
T  27632620 cttccaggaagaacagacaatgaaatcaagaactattgga 27632581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 26 - 81
Target Start/End: Complemental strand, 45594341 - 45594286
Alignment:
Q  26 atagcagcacaacttccaagaagaacagacaatgaaatcaagaactactggaacac 81  Q
    |||||||| ||||| ||| |||||||||||||||| || |||||||| ||||||||    
T  45594341 atagcagctcaactaccaggaagaacagacaatgagattaagaactattggaacac 45594286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 197 - 255
Target Start/End: Original strand, 3912013 - 3912071
Alignment:
Q  197 agtcacatggctcaatgggagagtgctcgtttggaagcagaagcaagacttgttagaga 255  Q
    |||||||||||||||||||| |||||| |  | ||||| ||||| ||||||||||||||    
T  3912013 agtcacatggctcaatgggaaagtgctagacttgaagctgaagctagacttgttagaga 3912071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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