View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19475_low_30 (Length: 435)
Name: NF19475_low_30
Description: NF19475
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19475_low_30 |
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Alignment Details
Target: chr4 (Bit Score: 323; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 1 - 419
Target Start/End: Original strand, 21829855 - 21830277
Alignment:
| Q |
1 |
aactaaaagtttacataaatgcataatttgttctccaaatttcattggagacatttactaaggaataaattggataaagtcacatatatatttacattgt |
100 |
Q |
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|||| ||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
21829855 |
aacttaaagtttacataaattcataatttgttctccaaatttcattggcgacatttactaaggaataaattggataaagtcacatatat--ttacattgt |
21829952 |
T |
|
| Q |
101 |
tgtaaatattgatctgatcttgattggacaaaccatattttaattgcatgttttattttaattttgcaaaattaaacttcgagtagtcgaatcttaatta |
200 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| || |||||||||||||||||||| |
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| T |
21829953 |
tgtaaatattgatccgatcttgattggacaaaccatattttaattgcatattttattttaattttgcaaaattaaaattggagtagtcgaatcttaatta |
21830052 |
T |
|
| Q |
201 |
gacaatgtagattgtgtgacactgtaaatgttgaataattctaaagacagacagaatcaagttacccttttcacaagatataa---attcaaagttgaag |
297 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||| |
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| T |
21830053 |
gacaatgtagattgtgtgacactgtaaatgttgaataattctaaagacagacagaatcaagttacccttttcacaagatataataaattcaa-gttgaag |
21830151 |
T |
|
| Q |
298 |
gaccaataaatacttcctcaagacctgaaa-cattataaaagggcaaggcaaacaccacaacttctcacccaaaagctacacattttcttct---aaatt |
393 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || |
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| T |
21830152 |
gaccaataaatacttcctcaagacctgaaaacattataaaagggcaaggcaaacaccacaacttctcacccaaaagctacacattttcttcttctaagtt |
21830251 |
T |
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| Q |
394 |
atttacacaaatccaaaataacaaac |
419 |
Q |
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|| || | ||| |||||||||||||| |
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| T |
21830252 |
atatataaaaacccaaaataacaaac |
21830277 |
T |
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