View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19475_low_31 (Length: 431)
Name: NF19475_low_31
Description: NF19475
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19475_low_31 |
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Alignment Details
Target: chr4 (Bit Score: 392; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 1 - 416
Target Start/End: Original strand, 37211643 - 37212058
Alignment:
| Q |
1 |
cccgattgcaaaccaagattttcaattaaatcaaatcaatacaataatttcgaactatcatctcatactgcattggataattaatgttgttacttgttat |
100 |
Q |
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| T |
37211643 |
cccgattgcaaaccaagattttcaattaaatcaaatcaatacaataatttcgatccatcatctcatactgcattggataattaatgttgttacttgttat |
37211742 |
T |
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| Q |
101 |
gatataagatactcatgcattggcataaagtcaaattaccttttcaagtgatggtccttggtagaatgaacttatttatgtcacagatgaatattattcc |
200 |
Q |
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| T |
37211743 |
gatataagatactcatgcattggcataaagtcaaattacctttttaagtgatggtccttggtagaatgaacttatttatgtcacagatgaatattattcc |
37211842 |
T |
|
| Q |
201 |
caataggcttgatatttgaattttgagttgttaatatgcatggtccagaaattactctaacatgttttggaggtttcatgttaaaattgcatgtgattaa |
300 |
Q |
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| T |
37211843 |
caattggcttgatatttgaattttgagttgttaatatgcatggtccagaaattactctaacatgttttggaggtttcatgttaaaattgcatgtgattaa |
37211942 |
T |
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| Q |
301 |
cacattttggaacttacaaatctctgtcttcttattggcagacaaaaaatacaattatcaacaataattttgcatcgagattgatatataaaattgcaat |
400 |
Q |
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||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37211943 |
cacattttggaacttacgaatctctgtattcttattggcagacaaaaaatacaattatcaacaataattttgcatcgagattgatatataaaattgcaat |
37212042 |
T |
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| Q |
401 |
gtctgcttctggtatg |
416 |
Q |
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| T |
37212043 |
gtctgcttctggtatg |
37212058 |
T |
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