View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19475_low_32 (Length: 430)
Name: NF19475_low_32
Description: NF19475
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19475_low_32 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 373; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 1 - 413
Target Start/End: Original strand, 46290426 - 46290845
Alignment:
| Q |
1 |
ttacatatacaacgatacttggaacagtggtgttattggtattcccttccattctaatgaaattgctactctttgttgaaaacctgctactcaatttgga |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46290426 |
ttacatatacaacgatacttggaacagtggtgttattggtattcccttccattctgatgaaattgctactctttgttgaaaacctgctactcaatttgga |
46290525 |
T |
|
| Q |
101 |
tctgaaacaaaacaacagaagcaattcaacaaaacatatagacagatagcaatgaatagaatttgagattga----acgcacgcactctgttttgagggc |
196 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
46290526 |
tctgaaacaaaacaacagaagcaattcaacaaaacatatagacagatagaaatgaatagaatttgagattgaacgcacgcacgcactctgttttgagggc |
46290625 |
T |
|
| Q |
197 |
agaggaatacaagggtgtgtagagattggtgagtcccaaagtgagcatgcaaaacgcgcctacaatgggtaaacgacgtcgtagcgtagagggcgaggag |
296 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46290626 |
agaggaatacaagggtgtgtagaaattggtgagtcccaaagtgagcatgcaaaacgcgcctacaatgggtaaacgacgtcgtagcgtagagggcgaggag |
46290725 |
T |
|
| Q |
297 |
aatattctggaagtggaagaagccattttagttgagaacatctttatt---ataaggtgttatgcctctctattaactctcattctgctcctttacttga |
393 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46290726 |
aagattctggaagtggaagaagccattttagttgagaacatctttattataataaggtgttatgcctctctattaactctcattctgctcctttacttga |
46290825 |
T |
|
| Q |
394 |
tgcgctccttttcatctctg |
413 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
46290826 |
tgcgctccttttcatctctg |
46290845 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 119; Significance: 1e-60; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 3 - 313
Target Start/End: Original strand, 2528240 - 2528552
Alignment:
| Q |
3 |
acatatacaacgatacttggaacagtggtgttattggtattcccttccattcta-----atgaaattgctactctttgttgaaaacctgctactcaattt |
97 |
Q |
| |
|
|||||||||| ||| |||||||||||||||||||| ||||||| |||||| || |||||||| || |||||||||||||||||||| ||||||| |
|
|
| T |
2528240 |
acatatacaaggatgcttggaacagtggtgttatttgtattcctgtccattatattataatgaaattactgttctttgttgaaaacctgctattcaattt |
2528339 |
T |
|
| Q |
98 |
ggatctgaaacaaaacaacagaagcaattcaacaaaacatatagacagatagcaatgaatagaatttgagattgaacgcacgcactc--tgttttgaggg |
195 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||| ||||||| ||| || ||| |||| ||| | | | |||| ||||| ||||||||||| |
|
|
| T |
2528340 |
agatctgaaacaaaacaagagaagcaattcaacaaaatatatagagagaaagaaatcaataaaat-----aacgcatgcacacactccctgttttgaggg |
2528434 |
T |
|
| Q |
196 |
cagaggaatacaagggtgtgtagagattggtgagtcccaaagtgagcatgcaaaacgcgcctacaatgggtaaacgacgtcgtagcgtagagggcgagga |
295 |
Q |
| |
|
|||||||||||||||||||| ||||||||| ||| ||||||||||||||| ||||||| |||||||||||||||| ||||| |||||| |||| ||| |
|
|
| T |
2528435 |
cagaggaatacaagggtgtgaagagattggagaggcccaaagtgagcatgaaaaacgcacctacaatgggtaaacaacgtcttagcgtggaggaggagac |
2528534 |
T |
|
| Q |
296 |
gaatattctggaagtgga |
313 |
Q |
| |
|
||| |||| ||||||||| |
|
|
| T |
2528535 |
gaagattccggaagtgga |
2528552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University