View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19475_low_33 (Length: 417)
Name: NF19475_low_33
Description: NF19475
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19475_low_33 |
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Alignment Details
Target: chr6 (Bit Score: 182; Significance: 3e-98; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 184 - 406
Target Start/End: Complemental strand, 13064648 - 13064426
Alignment:
| Q |
184 |
caagtgaagataaaatctcaaagaaattgtttgttccatttgttatagctgcaggttcagcactacttgttactctagtagttatgtttgtccggcatag |
283 |
Q |
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| T |
13064648 |
caagtgaagataaaatctcaaagaaattgtttattccatttgttatagctgcaggttcagcactacttgttactctagtagttatgtttgtccggcatag |
13064549 |
T |
|
| Q |
284 |
aaaatctaggaaaaagtaaaatttgagatcacaaaaatctagttatccannnnnnnactagctaatcactattttgttccacaagattatattgttggct |
383 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||| || || |||||||||||||||||||||||||||||||||||||| |
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| T |
13064548 |
aaaatctaggaaaaggtaaaatttgagatcacaaaaatctagttatccatttttttacaagttaatcactattttgttccacaagattatattgttggct |
13064449 |
T |
|
| Q |
384 |
aagtttggctatcaaattgatga |
406 |
Q |
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|||||||||||||||||| |||| |
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| T |
13064448 |
aagtttggctatcaaatttatga |
13064426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 184 - 406
Target Start/End: Complemental strand, 13071402 - 13071180
Alignment:
| Q |
184 |
caagtgaagataaaatctcaaagaaattgtttgttccatttgttatagctgcaggttcagcactacttgttactctagtagttatgtttgtccggcatag |
283 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13071402 |
caagtgaagataaaatctcaaagaaattgtttattccatttgttatagctgcaggttcagcactacttgttactctagtagttatgtttgtccggcatag |
13071303 |
T |
|
| Q |
284 |
aaaatctaggaaaaagtaaaatttgagatcacaaaaatctagttatccannnnnnnactagctaatcactattttgttccacaagattatattgttggct |
383 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||| || || |||||||||||||||||||||||||||||||||||||| |
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| T |
13071302 |
aaaatctaggaaaaggtaaaatttgagatcacaaaaatctagttatccatttttttacaagttaatcactattttgttccacaagattatattgttggct |
13071203 |
T |
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| Q |
384 |
aagtttggctatcaaattgatga |
406 |
Q |
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|||||||||||||||||| |||| |
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| T |
13071202 |
aagtttggctatcaaatttatga |
13071180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 13064831 - 13064752
Alignment:
| Q |
1 |
agaaaagggaatccaaaatagatgttcaagagtcaacaaaaagtaaaagaggccaagaaattgttgaaaaatgtataaac |
80 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
13064831 |
agaaaagggaatccaaaatagatgttcaagagtcaacaaaaagtaacagaggccaagaaattgttgaaaaatgtataaac |
13064752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 13071585 - 13071506
Alignment:
| Q |
1 |
agaaaagggaatccaaaatagatgttcaagagtcaacaaaaagtaaaagaggccaagaaattgttgaaaaatgtataaac |
80 |
Q |
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| T |
13071585 |
agaaaagggaatccaaaatagatgttcaagagtcaacaaaaagtaacagaggccaagaaattgttgaaaaatgtataaac |
13071506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 13075789 - 13075710
Alignment:
| Q |
1 |
agaaaagggaatccaaaatagatgttcaagagtcaacaaaaagtaaaagaggccaagaaattgttgaaaaatgtataaac |
80 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
13075789 |
agaaaagggaatccaaaatagatgttcaagagtcaacaaaaagtaacagaggccaagaaattgttgaaaaatgtataaac |
13075710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 13065348 - 13065301
Alignment:
| Q |
1 |
agaaaagggaatccaaaatagatgttcaagagtcaacaaaaagtaaaa |
48 |
Q |
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|||||| ||| |||||||| |||||||||||||||||||||||||||| |
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| T |
13065348 |
agaaaaaggactccaaaatggatgttcaagagtcaacaaaaagtaaaa |
13065301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 13072102 - 13072055
Alignment:
| Q |
1 |
agaaaagggaatccaaaatagatgttcaagagtcaacaaaaagtaaaa |
48 |
Q |
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|||||| ||| |||||||| |||||||||||||||||||||||||||| |
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| T |
13072102 |
agaaaaaggactccaaaatggatgttcaagagtcaacaaaaagtaaaa |
13072055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 13076306 - 13076259
Alignment:
| Q |
1 |
agaaaagggaatccaaaatagatgttcaagagtcaacaaaaagtaaaa |
48 |
Q |
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|||||| ||| |||||||| |||||||||||||||||||||||||||| |
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| T |
13076306 |
agaaaaaggactccaaaatggatgttcaagagtcaacaaaaagtaaaa |
13076259 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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