View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19475_low_35 (Length: 415)
Name: NF19475_low_35
Description: NF19475
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19475_low_35 |
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Alignment Details
Target: chr7 (Bit Score: 332; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 1 - 405
Target Start/End: Original strand, 29068179 - 29068583
Alignment:
| Q |
1 |
tatatcaacgaacctacgattatggccccatataaggtggctctggattagttcagtcgagattgaaagctgtgattccttaataaaactacatacgaaa |
100 |
Q |
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| T |
29068179 |
tatatcaacgaaactaagattatggccacatttaaggtgattctggattagtccagtcaagattgaaaacggtgattccttaatactactacatacgaaa |
29068278 |
T |
|
| Q |
101 |
atcaagatggagctatatatgaagcatcccatcatacttgattagaaactccagcagcatgactgcatacataaaattttaatttaaacttcaaacaaat |
200 |
Q |
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| T |
29068279 |
atcaagatggagctatatatgaagcatcccatcaaacttgattagaaactccagcagcatgactgcatacataaaattttaatttaaacttcaaacaaat |
29068378 |
T |
|
| Q |
201 |
tagtagttatagagggtggtaaatttatgaattttttgcttctttgtgcaacaagccacctagcatgtgttaaaaagaactaacaacacctccacttaca |
300 |
Q |
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| T |
29068379 |
tagtagttatagagggtggtaaatttatgaattttttgcttctttgtgcaacaagccacctagcatgtgttaaaaagaactaacaacacctccacttaca |
29068478 |
T |
|
| Q |
301 |
tttttgtttagcttctctttaaaacatcagtaatgcatnnnnnnnttatattttggtcattacaatgattcaaagacatttatctgacattctgacctac |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29068479 |
tttttgtttagcttctctttaaaacatcagtaatgcataaaaaaattatattttggtcattacaatgattcaaagacatttatctgacattctgacctac |
29068578 |
T |
|
| Q |
401 |
ctatg |
405 |
Q |
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||||| |
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| T |
29068579 |
ctatg |
29068583 |
T |
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