View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19475_low_37 (Length: 408)
Name: NF19475_low_37
Description: NF19475
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19475_low_37 |
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Alignment Details
Target: chr4 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 1 - 392
Target Start/End: Complemental strand, 33321247 - 33320871
Alignment:
| Q |
1 |
acccaccacttgtagagttgcaggcacgttctttttctcaacttgattggtattaaatgatatgtttagttgtggcattttggaaggtactcaaattttt |
100 |
Q |
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| T |
33321247 |
acccaccacttgtagagttgcaggcacgttctttttctcaacttgattggtattaaatgatatgtttagttgtggcattttggaaggtactcaaattctt |
33321148 |
T |
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| Q |
101 |
cttctttagggaattacatacacacatgaaacgagttggaaaatcttccaaaatttacctgtttgttttatattctggtaaatgcaaatggagaaacact |
200 |
Q |
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| T |
33321147 |
catctttagggaattacatacacacatgaaacgagttggaaaatcttccaaaattaacctgtttgttttatattctggtaaatgcaaatggagaaacact |
33321048 |
T |
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| Q |
201 |
tttcaatccaagtttttcttgcttttactgagattcttttgagccaccacagctaggtggctaatgctctcttttcctatgctctcttttcctcagaagt |
300 |
Q |
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| T |
33321047 |
tttcaatacaagtttttcttgcttttactgagattcttttgagccaccacagctaggtggctaatgctctcttt---------------tcctcagaagt |
33320963 |
T |
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| Q |
301 |
ttacaagttcaattatgttccagcattcagatcgaagccgcgaaggatggtgtaggtaaggccatttgtggtaacggtaatggtcatggaac |
392 |
Q |
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| T |
33320962 |
ttacaagttcaattatgttccagcattcagatcgaagccgcgaaggacggtgtaggtaaggccatttgtggtaacggtaatggtcatggaac |
33320871 |
T |
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