View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19475_low_39 (Length: 393)
Name: NF19475_low_39
Description: NF19475
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19475_low_39 |
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Alignment Details
Target: chr5 (Bit Score: 277; Significance: 1e-155; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 56 - 352
Target Start/End: Complemental strand, 13854027 - 13853731
Alignment:
| Q |
56 |
gaatgaatgagaagatagaagaactatggagagaagtacgagaattaagtttaggaagcaaaagaaccatagaacgtttagaatctccaccaacactcca |
155 |
Q |
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| T |
13854027 |
gaatgaatgagaagatagaagaactatggagagaagtacgagaattaagtttaggaagcaacagaaccatagaacgtttagaatctccaccaacactcca |
13853928 |
T |
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| Q |
156 |
atttcaggatagcttatgaaaagaacatagagcttaaataaagacagtttgattttacttgacgttttgtcacacataagtacttatatgataagcgtca |
255 |
Q |
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| T |
13853927 |
atttcaggatagcttatgaaaagaacatagagcttaaataaagacagtttgattttacttgacgttttgttatacataagtacttatatgataagcgtca |
13853828 |
T |
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| Q |
256 |
atgctataagtgtcgagttaagttctttatgcaaataaggtcactgccaaaggttttagcttttggaattgaatccaattggggtgttgtggatata |
352 |
Q |
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| T |
13853827 |
atgctataagtgtcgagttaagttctttatgcaaacaaggtcactgccaaaggttttagcttttggaattgaatccatttggggtgttgtggatata |
13853731 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 7 - 151
Target Start/End: Original strand, 10219216 - 10219359
Alignment:
| Q |
7 |
tggtgatcgatcacaacaactgaaccagatgaaataacatagtatctg--agaatgaatgagaagatagaagaactatggagagaagtacgagaattaag |
104 |
Q |
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| T |
10219216 |
tggtgatcgatcacaac---tgaaccagatgaaataacatagtatctgtgagaatgaatgagaagatagaagaactatggagagaagtacgagaattaag |
10219312 |
T |
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| Q |
105 |
tttaggaagcaaaagaaccatagaacgtttagaatctccaccaacac |
151 |
Q |
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| T |
10219313 |
tctaggaagcaaaagaagcatagaacgtttagaatcagcaccaacac |
10219359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 229 - 267
Target Start/End: Complemental strand, 24193529 - 24193491
Alignment:
| Q |
229 |
acataagtacttatatgataagcgtcaatgctataagtg |
267 |
Q |
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| T |
24193529 |
acataagtacttatatgataagcgtttatgctataagtg |
24193491 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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