View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19475_low_40 (Length: 390)
Name: NF19475_low_40
Description: NF19475
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19475_low_40 |
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Alignment Details
Target: chr3 (Bit Score: 257; Significance: 1e-143; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 19 - 330
Target Start/End: Original strand, 36048290 - 36048609
Alignment:
| Q |
19 |
ctaacattatcaattggacaataaacaagagccgataaatagaagcttatgaaattactcgtccttactaccctaaccttatttatcgatcaagtaacaa |
118 |
Q |
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| T |
36048290 |
ctaacattatcaattggacaataaacaagagccgataaatagaagcttatgaaattactcgtccttactaccctaaccttat----cgatcaagtaacaa |
36048385 |
T |
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| Q |
119 |
actaataaggaaaacaaatatga------gtgagtgctgaaacgagaacccatgtaaat------caatcttaaatcacaccataccctaacaatcagat |
206 |
Q |
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| T |
36048386 |
actaataaggaaaacaaatatgaatatgagtgagtgctgaaacgagaacccatgtgaatgtgaatcaatcttaaatcacaccataccctaacaatcagat |
36048485 |
T |
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| Q |
207 |
gtaccaatcctatgtactacacttttaatcaatggtgtgatcaccctttttctaagaaacaaggcccacatatgaacacgaaatcacacaattgcccaaa |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36048486 |
gtaccaatcctatgtactacacttttaatcaatggtgtgatcaccctttttctaagaaacaaggcccacatatgaacacgaaatcacacaattgcccaaa |
36048585 |
T |
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| Q |
307 |
ccccaaataaaagaccttatttct |
330 |
Q |
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|||||||||||||||||||||||| |
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| T |
36048586 |
ccccaaataaaagaccttatttct |
36048609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 350 - 380
Target Start/End: Original strand, 36048629 - 36048659
Alignment:
| Q |
350 |
gaaccagcttctgctgatctcattcttcatc |
380 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
36048629 |
gaaccagcttctgctgatctcattcttcatc |
36048659 |
T |
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