View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19475_low_41 (Length: 385)
Name: NF19475_low_41
Description: NF19475
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19475_low_41 |
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Alignment Details
Target: chr3 (Bit Score: 339; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 1 - 371
Target Start/End: Original strand, 40353921 - 40354291
Alignment:
| Q |
1 |
tcaacacgatcatgcatatataaaacagttgaaaagattatgttttcatgagtataaacatgtaaaatcctgatgtgatgatatactgatccgaatttat |
100 |
Q |
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| T |
40353921 |
tcaacacgaacatgcatatacaaaacagttgaaaagattatgttttcatgagtataaacatgtaaaatcctgatgtgatgatatactgatccgaatttat |
40354020 |
T |
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| Q |
101 |
tatgttgattgttaaatataatatataatacccataataccaacctgcatttcttagttcttcctccatataatacccataatttccaatcctttcaagg |
200 |
Q |
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| T |
40354021 |
tatgttgattgttaaatataatatataatacccataataccaacctgcatttcttagttcttcctccatataatacccataatttccaatcctttcaagg |
40354120 |
T |
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| Q |
201 |
tcaaagcggtgttcaactttcataggaactttttaaaaagaattgtagttgagtggaaccattttagtttgattaagcacaaaaacttcaggctttcgga |
300 |
Q |
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| T |
40354121 |
tcaaagcggtgttcaacttccataggaactttttaaaaagaattgtagttgagtggaaccattttagtttgattaaacacaaaaactgcaggctttcgaa |
40354220 |
T |
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| Q |
301 |
aaatcggtaaaaagtttaaaggatgtattaaaaaggaggtcatgattgaccttatggacgaagtagaattt |
371 |
Q |
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| T |
40354221 |
aaatcggtaaaaagtttaaaggatgtattgaaaaggaggtcatggttgaccttatggacgaagtagaattt |
40354291 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 119
Target Start/End: Complemental strand, 44139508 - 44139463
Alignment:
| Q |
75 |
gtgatgat-atactgatccgaatttattatgttgattgttaaatat |
119 |
Q |
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| T |
44139508 |
gtgatgatgatactgatccgaatttataatgttgatcgttaaatat |
44139463 |
T |
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