View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19475_low_43 (Length: 381)
Name: NF19475_low_43
Description: NF19475
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19475_low_43 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 354; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 8 - 381
Target Start/End: Original strand, 29331617 - 29331990
Alignment:
| Q |
8 |
catcatcactaacttgaaatgcacgaaatgggtaaaaatagtaatgaaaatcattgtctgacattgtatacactcagaaccttgtagtttttgcataatg |
107 |
Q |
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| T |
29331617 |
catcatcactaacttgaaatgcacggaatgggtaaaaatagtaatgaaaatcattgtctgacattgtatacactcagaaccttgtagtttttgcataatg |
29331716 |
T |
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| Q |
108 |
gtcaacttcacagttcacacacaggaacatatggtgcaggcattgattaataaataacgttctaatggcacaattataagtaaccaacaaagacttacac |
207 |
Q |
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| T |
29331717 |
gtcaacttcacagttcacacacaggaacatatggtgcaggcattgattaataaataatgttctaatggcacaattataagtaaccaacaaagacttacac |
29331816 |
T |
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| Q |
208 |
actgagtataatccattagacttttatttgttaaatactattgattgatcagagaaagtttatatgggttgaatctattcaaactcggccgtgtcattaa |
307 |
Q |
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| T |
29331817 |
actgagtataatccattagacttttatttgttaaatactattgattgatcagagaaagtttatatgggttgaaactattcaaactcggcagtgtcattaa |
29331916 |
T |
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| Q |
308 |
aatttaggcctgtgtaagagaaaccaaaagacaaaaacaaacatacaactacacatcatgacatacgtatatca |
381 |
Q |
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| T |
29331917 |
aatttaggcctgtgtaagagaaaccaaaagacaaatacaaacatacaactacacatcatgacatacgtatatca |
29331990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 213 - 342
Target Start/End: Original strand, 29303480 - 29303609
Alignment:
| Q |
213 |
gtataatccattagacttttatttgttaaatactattgattgatcagagaaagtttatatgggttgaatctattcaaactcggccgtgtcattaaaattt |
312 |
Q |
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| T |
29303480 |
gtataatccgttagattttaatttgttaaatattactgattgataagtgaaagtccacatagaatgaaattatttaaactcgggggtgtcattaaaattt |
29303579 |
T |
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| Q |
313 |
aggcctgtgtaagagaaaccaaaagacaaa |
342 |
Q |
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| T |
29303580 |
aggcttgtgtaagagaaactaaaatacaaa |
29303609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 215 - 266
Target Start/End: Original strand, 29320825 - 29320876
Alignment:
| Q |
215 |
ataatccattagacttttatttgttaaatactattgattgatcagagaaagt |
266 |
Q |
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| T |
29320825 |
ataatccattagattttaatttgttaaatattattgattgataagtgaaagt |
29320876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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