View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19475_low_48 (Length: 351)
Name: NF19475_low_48
Description: NF19475
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19475_low_48 |
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Alignment Details
Target: chr5 (Bit Score: 314; Significance: 1e-177; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 1 - 338
Target Start/End: Complemental strand, 40531261 - 40530924
Alignment:
| Q |
1 |
taatttaaggtggctaagagaaaaagtctgaagtatggaattattaacaaaaaaggaaaagcaagcaaaccttgaactgagtcaaatatgttagatttgg |
100 |
Q |
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| T |
40531261 |
taatttaaggtggctaagagaaaaagtctgaagtatgaaattattaacaaaaaaggaagaacaagcaaaccttgaactgagtcaaatatgttagatttgg |
40531162 |
T |
|
| Q |
101 |
attcatgtgtcagaatatgtatttaaaatgtttgatgttttgttcaaaacaatgttgtggaaggacattgacattaatgtccttgccagagaatccgaca |
200 |
Q |
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| T |
40531161 |
attcatgtgtcagaatatgtttttaaaatgtttgatgttttgttgaaaacaatgttgtggaaggacattgacattaatgtccttgccagagaatccgaca |
40531062 |
T |
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| Q |
201 |
gaagtttcattctcatttcttacgtggacactaaccatttgagatagaaattctatatgaatcattttgataaatgaccagatagactagtagttaaaaa |
300 |
Q |
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| T |
40531061 |
gaagtttcattctcatttcttacgtggacactaaccatttgagatagaaattctatatgaatcatcttgataaatgaccagatagactagtagttaaaaa |
40530962 |
T |
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| Q |
301 |
atagtgacttactatttatatcaatttgattaaaataa |
338 |
Q |
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| T |
40530961 |
atagtgacttactatttatatcaatttgattaaaataa |
40530924 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 169
Target Start/End: Complemental strand, 40536231 - 40536066
Alignment:
| Q |
1 |
taatttaaggtggctaagagaaaaagtctgaagtatggaatt--attaacaaaaaaggaaaagcaagcaaaccttgaactgagtcaaatatgttagattt |
98 |
Q |
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| T |
40536231 |
taatttaaggtggccaagagaaaaagtttgaagtatg-aatggaattaacaaaaaaggaaagaataggcaaccttgaaccgagtgaaat--gttagattt |
40536135 |
T |
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| Q |
99 |
ggattcatgtgtcagaatatgtatttaaaatgtttgatgttttgttcaaaacaatgttgtggaaggacatt |
169 |
Q |
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| T |
40536134 |
ggattcatatgtcagaatatgtttttaaaatgtttgagg--ttgtataaaacaatgctgtggtaggacatt |
40536066 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 19149254 - 19149178
Alignment:
| Q |
1 |
taatttaaggtggctaagagaaaaagtctgaagtatggaattattaa-caaaaaaggaaaagcaagcaaaccttgaac |
77 |
Q |
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||||| |||||||| |||||||||||||||||||||||||||||||| |||||||||| | ||||| |||||||||| |
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| T |
19149254 |
taattaaaggtggccaagagaaaaagtctgaagtatggaattattaaggaaaaaaggaagaacaagc-aaccttgaac |
19149178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 19430295 - 19430219
Alignment:
| Q |
1 |
taatttaaggtggctaagagaaaaagtctgaagtatggaattattaa-caaaaaaggaaaagcaagcaaaccttgaac |
77 |
Q |
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||||| ||||||| |||||||||||||||||||||||||||||||| |||||||||| | ||||| |||||||||| |
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| T |
19430295 |
taattaaaggtggtcaagagaaaaagtctgaagtatggaattattaaggaaaaaaggaataacaagc-aaccttgaac |
19430219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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