View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19475_low_50 (Length: 345)
Name: NF19475_low_50
Description: NF19475
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19475_low_50 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 17 - 304
Target Start/End: Complemental strand, 41337967 - 41337675
Alignment:
| Q |
17 |
cacagactagaattaaaaaacatgaaaaatataataaaagaagagagaggcaacacaaataatccatctgctaacttatatagattattagtcttgaaat |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
41337967 |
cacagactagaattaaaaaacatgaaaaatataataaaagaagagagaggcaacacaaataatccatcttctaacttatatagattattagtcttgaaat |
41337868 |
T |
|
| Q |
117 |
c-----tagctgcaggtctaacagggcatccaaaatttgcaattgtttggatccactgatatattatttagcataatttggagttatgtatacttagaga |
211 |
Q |
| |
|
| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41337867 |
catatctagctacaggtctaacagggcatccaaaatttgcaattgtttggatccactgatatattatttagcataatttggagttatgtatacttagaga |
41337768 |
T |
|
| Q |
212 |
ttttgttcatcaaaattacatttattaatttatcacactcaaaagtggaaaaatatcaatgctcttaagaatatactgcagacacttcataca |
304 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
41337767 |
ttttgttcatcaaaattacatttattaatttatcacactcaaaagtggaaaaatatcaatgctcttaagaatatactgtagacacttcataca |
41337675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 66; Significance: 4e-29; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 136 - 233
Target Start/End: Complemental strand, 36136327 - 36136230
Alignment:
| Q |
136 |
ggcatccaaaatttgcaattgtttggatccactgatatattatttagcataatttggagttatgtatacttagagattttgttcatcaaaattacatt |
233 |
Q |
| |
|
|||||| |||||||||||| |||||||||||||||||||||||| ||||||||||||||||| ||| ||| ||||||||||| |||||||||||||| |
|
|
| T |
36136327 |
ggcatctaaaatttgcaatagtttggatccactgatatattattcagcataatttggagttacttatgcttggagattttgtttatcaaaattacatt |
36136230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 242 - 304
Target Start/End: Complemental strand, 36136191 - 36136129
Alignment:
| Q |
242 |
tatcacactcaaaagtggaaaaatatcaatgctcttaagaatatactgcagacacttcataca |
304 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
36136191 |
tatcacactcaaaagtggaaaaatatcattgctcttaagaatatactgcagacacttcataca |
36136129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University