View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19475_low_52 (Length: 340)
Name: NF19475_low_52
Description: NF19475
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19475_low_52 |
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Alignment Details
Target: chr2 (Bit Score: 321; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 1 - 325
Target Start/End: Complemental strand, 9494813 - 9494489
Alignment:
| Q |
1 |
tgactggatggaaatcaccatgttcggccacgtgtttcgcattcgtaatatacaacatttctcattatacttatatctattcgctttttatttgatttgt |
100 |
Q |
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| T |
9494813 |
tgactggatggaaatcaccatgttcggccacgtgtttcgcattcgtaatatacaacatttctcattatacttatatctattcgctttttatttgatttgt |
9494714 |
T |
|
| Q |
101 |
aaacatagtaaatttaaattttagaaacaatatctccatagtgcagttacacagtacatcaatttcatagtgcattatagaattaaccaagcacaatggt |
200 |
Q |
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| T |
9494713 |
aaacatagtaaatttaaattttagaaacaatatctccatagtgcagttacacagtacatcaatttcatagtgcattatagaattaaccaagtacaatggt |
9494614 |
T |
|
| Q |
201 |
acatgatagttgaaaagtacctgcaactccagattctgaattatctccacttgcagcattcttctttctccttgacctacacatacagttgaaagcatca |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9494613 |
acatgatagttgaaaagtacctgcaactccagattctgaattatctccacttgcagcattcttctttctccttgacctacacatacagttgaaagcatca |
9494514 |
T |
|
| Q |
301 |
tatagcaaaattaccacatcatttt |
325 |
Q |
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||||||||||||||||||||||||| |
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| T |
9494513 |
tatagcaaaattaccacatcatttt |
9494489 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 151 - 279
Target Start/End: Complemental strand, 9522952 - 9522821
Alignment:
| Q |
151 |
acagtacatcaatttcatagtgcattatagaattaaccaagcacaatggtacatgatagttg-aaaagtacct---gcaactccagattctgaattatct |
246 |
Q |
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|||||| | |||| |||||||||||||||||||||| ||| |||||||||||||||||||| |||||||||| ||| | ||||||||||||||||| |
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| T |
9522952 |
acagtagaacaatgtcatagtgcattatagaattaat-aagtacaatggtacatgatagttgaaaaagtacctgcagcagcagcagattctgaattatct |
9522854 |
T |
|
| Q |
247 |
ccacttgcagcattcttctttctccttgaccta |
279 |
Q |
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| T |
9522853 |
ccaaataaagcattcttctgtctccttgcccta |
9522821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 153 - 279
Target Start/End: Complemental strand, 20196402 - 20196270
Alignment:
| Q |
153 |
agtacatcaatttcatagtgcattatagaattaaccaagcacaatggtacatgatagttg-aaaagtacct------gcaactccagattctgaattatc |
245 |
Q |
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|||||| ||||||||||||||||||||||||||| ||| ||||||||| |||||||||| |||||||||| ||| | ||||||||| ||||||| |
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| T |
20196402 |
agtacaacaatttcatagtgcattatagaattaa-taagtacaatggtatatgatagttgaaaaagtacctgcagcagcagcaccagattctaaattatc |
20196304 |
T |
|
| Q |
246 |
tccacttgcagcattcttctttctccttgaccta |
279 |
Q |
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|||| | || |||| ||||||||||||| |||| |
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| T |
20196303 |
tccaaatacaacattgttctttctccttgcccta |
20196270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 59; Significance: 6e-25; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 217 - 283
Target Start/End: Original strand, 22514226 - 22514292
Alignment:
| Q |
217 |
gtacctgcaactccagattctgaattatctccacttgcagcattcttctttctccttgacctacaca |
283 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
22514226 |
gtacctgcagctccagattctgaattatctccacttgcagcattcttctttttccttgacctacaca |
22514292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 217 - 283
Target Start/End: Original strand, 23046279 - 23046345
Alignment:
| Q |
217 |
gtacctgcaactccagattctgaattatctccacttgcagcattcttctttctccttgacctacaca |
283 |
Q |
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||||||||| |||||||||||||||||| |||||||||||||||||| ||| ||||||||||||||| |
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| T |
23046279 |
gtacctgcagctccagattctgaattatttccacttgcagcattcttgtttttccttgacctacaca |
23046345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 217 - 272
Target Start/End: Complemental strand, 22512805 - 22512750
Alignment:
| Q |
217 |
gtacctgcaactccagattctgaattatctccacttgcagcattcttctttctcct |
272 |
Q |
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|||||||| |||||||||||||||||||||||||||| |||||||||||| |||| |
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| T |
22512805 |
gtacctgctgctccagattctgaattatctccacttgctgcattcttctttttcct |
22512750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 5 - 65
Target Start/End: Original strand, 22514092 - 22514152
Alignment:
| Q |
5 |
tggatggaaatcaccatgttcggccacgtgtttcgcattcgtaatatacaacatttctcat |
65 |
Q |
| |
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||||||||||| | || ||| || || |||||| |||||||||||||||||||||||||| |
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| T |
22514092 |
tggatggaaatgaacaagtttggtcatatgtttcacattcgtaatatacaacatttctcat |
22514152 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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