View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19475_low_57 (Length: 324)

Name: NF19475_low_57
Description: NF19475
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19475_low_57
NF19475_low_57
[»] chr8 (3 HSPs)
chr8 (211-304)||(25573305-25573399)
chr8 (212-304)||(25578024-25578117)
chr8 (211-304)||(3856660-3856754)
[»] scaffold0779 (1 HSPs)
scaffold0779 (212-304)||(1815-1908)
[»] chr5 (1 HSPs)
chr5 (212-304)||(23173404-23173497)
[»] chr2 (4 HSPs)
chr2 (212-304)||(26363655-26363748)
chr2 (212-304)||(18497285-18497378)
chr2 (212-304)||(18503596-18503689)
chr2 (212-304)||(26358949-26359042)


Alignment Details
Target: chr8 (Bit Score: 79; Significance: 6e-37; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 211 - 304
Target Start/End: Original strand, 25573305 - 25573399
Alignment:
Q  211 ttgttgaattacaagaatattgaaacagaagagagaaaactgaagaaaaagtatgaagcaaa-aatattattttgcatagaatgaaagttagtta 304  Q
    ||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  25573305 ttgttgagttacaagaatattgaaacagaagagagaaaagtgaagaaaaagtatgaagcaaagaatattattttgcatagaatgaaagttagtta 25573399  T

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Target: chr8; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 212 - 304
Target Start/End: Original strand, 25578024 - 25578117
Alignment:
Q  212 tgttgaattacaagaatattgaaacagaagagagaaaactgaagaaaaagtatgaagcaaa-aatattattttgcatagaatgaaagttagtta 304  Q
    |||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||| |||||||||||||||||||||||||||    
T  25578024 tgttgagttacaagaatattgaaacagaagagagaaaagtgaagaaaaagtatgaagcaaagaatagtattttgcatagaatgaaagttagtta 25578117  T

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Target: chr8; HSP #3
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 211 - 304
Target Start/End: Complemental strand, 3856754 - 3856660
Alignment:
Q  211 ttgttgaattacaagaatattgaaacagaagagagaaaactgaagaaaaagtatgaagcaaa-aatattattttgcatagaatgaaagttagtta 304  Q
    ||||||| ||||||||||||||||||||||||||||||| ||||||| |||||||||||||| |||| |||||||||||||||||||||||||||    
T  3856754 ttgttgagttacaagaatattgaaacagaagagagaaaagtgaagaacaagtatgaagcaaagaatagtattttgcatagaatgaaagttagtta 3856660  T

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Target: scaffold0779 (Bit Score: 78; Significance: 3e-36; HSPs: 1)
Name: scaffold0779
Description:

Target: scaffold0779; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 212 - 304
Target Start/End: Complemental strand, 1908 - 1815
Alignment:
Q  212 tgttgaattacaagaatattgaaacagaagagagaaaactgaagaaaaagtatgaagcaaa-aatattattttgcatagaatgaaagttagtta 304  Q
    |||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  1908 tgttgagttacaagaatattgaaacagaagagagaaaagtgaagaaaaagtatgaagcaaagaatattattttgcatagaatgaaagttagtta 1815  T

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Target: chr5 (Bit Score: 74; Significance: 6e-34; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 212 - 304
Target Start/End: Original strand, 23173404 - 23173497
Alignment:
Q  212 tgttgaattacaagaatattgaaacagaagagagaaaactgaagaaaaagtatgaagcaaa-aatattattttgcatagaatgaaagttagtta 304  Q
    |||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||| |||||||||||||||||||||||||||    
T  23173404 tgttgagttacaagaatattgaaacagaagagagaaaagtgaagaaaaagtatgaagcaaagaatagtattttgcatagaatgaaagttagtta 23173497  T

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Target: chr2 (Bit Score: 74; Significance: 6e-34; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 212 - 304
Target Start/End: Original strand, 26363655 - 26363748
Alignment:
Q  212 tgttgaattacaagaatattgaaacagaagagagaaaactgaagaaaaagtatgaagcaaa-aatattattttgcatagaatgaaagttagtta 304  Q
    |||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||| |||||||||||||||||||||||||||    
T  26363655 tgttgagttacaagaatattgaaacagaagagagaaaagtgaagaaaaagtatgaagcaaagaatagtattttgcatagaatgaaagttagtta 26363748  T

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Target: chr2; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 212 - 304
Target Start/End: Original strand, 18497285 - 18497378
Alignment:
Q  212 tgttgaattacaagaatattgaaacagaagagagaaaactgaagaaaaagtatgaagcaaa-aatattattttgcatagaatgaaagttagtta 304  Q
    |||||| |||||| |||||||||||||||||||||||| |||||||||||||||||||||| |||| |||||||||||||||||||||||||||    
T  18497285 tgttgagttacaaaaatattgaaacagaagagagaaaagtgaagaaaaagtatgaagcaaagaatagtattttgcatagaatgaaagttagtta 18497378  T

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Target: chr2; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 212 - 304
Target Start/End: Original strand, 18503596 - 18503689
Alignment:
Q  212 tgttgaattacaagaatattgaaacagaagagagaaaactgaagaaaaagtatgaagcaaa-aatattattttgcatagaatgaaagttagtta 304  Q
    |||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||| |||| ||||||||||||||||||||||    
T  18503596 tgttgagttacaagaatattgaaacagaagagagaaaagtgaagaaaaagtatgaagcaaagaatagtattatgcatagaatgaaagttagtta 18503689  T

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Target: chr2; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 212 - 304
Target Start/End: Original strand, 26358949 - 26359042
Alignment:
Q  212 tgttgaattacaagaatattgaaacagaagagagaaaactgaagaaaaagtatgaagcaaa-aatattattttgcatagaatgaaagttagtta 304  Q
    |||||| ||||||||||||||||||||||||||||||| |||||||||| ||||||||||| |||| |||||||||||||||||||||||||||    
T  26358949 tgttgagttacaagaatattgaaacagaagagagaaaagtgaagaaaaaatatgaagcaaagaatagtattttgcatagaatgaaagttagtta 26359042  T

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