View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19475_low_64 (Length: 273)

Name: NF19475_low_64
Description: NF19475
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19475_low_64
NF19475_low_64
[»] chr3 (16 HSPs)
chr3 (1-258)||(10103710-10103967)
chr3 (1-257)||(10214646-10214902)
chr3 (1-257)||(10223387-10223643)
chr3 (101-247)||(10180264-10180409)
chr3 (135-247)||(10123644-10123755)
chr3 (101-247)||(10256379-10256524)
chr3 (13-115)||(10018949-10019052)
chr3 (13-115)||(10256263-10256366)
chr3 (15-115)||(10180148-10180251)
chr3 (13-115)||(10123496-10123599)
chr3 (7-66)||(10076222-10076281)
chr3 (1-58)||(10439055-10439112)
chr3 (195-247)||(10028802-10028854)
chr3 (101-195)||(10019065-10019158)
chr3 (25-76)||(10516457-10516508)
chr3 (216-257)||(11768325-11768366)
[»] chr5 (2 HSPs)
chr5 (1-257)||(26793229-26793485)
chr5 (1-241)||(26818745-26818985)
[»] scaffold0083 (1 HSPs)
scaffold0083 (12-257)||(50807-51042)
[»] chr2 (2 HSPs)
chr2 (1-67)||(26892394-26892460)
chr2 (1-67)||(26897833-26897899)


Alignment Details
Target: chr3 (Bit Score: 254; Significance: 1e-141; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 1 - 258
Target Start/End: Original strand, 10103710 - 10103967
Alignment:
Q  1 tcttagaaagtgtgtgttttgaaatatcatttacattcaaaccttcatttagtaaatgctatatttttcagcaatgatatactcatcagttatcacattt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10103710 tcttagaaagtgtgtgttttgaaatatcatttacattcaaaccttcatttagtaaatgctatatttttcagcaatgatatactcatcagttatcacattt 10103809  T
Q  101 agaaaggttatcaacgtaatctctagtaaattatttttaaattttaacacaggtgataagaaaaatgacaatatgatacatttatttttagtatatgaga 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10103810 agaaaggttatcaacgtaatctctagtaaattatttttaaattttaacacaggtgataagaaaaatgacaatatgatacatttatttttagtatatgaga 10103909  T
Q  201 ggactttaactagaaattgcatatttgactcactttcctaaagtaaaaatgtatatac 258  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10103910 ggaatttaactagaaattgcatatttgactcactttcctaaagtaaaaatgtatatac 10103967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 1 - 257
Target Start/End: Original strand, 10214646 - 10214902
Alignment:
Q  1 tcttagaaagtgtgtgttttgaaatatcatttacattcaaaccttcatttagtaaatgctatatttttcagcaatgatatactcatcagttatcacattt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10214646 tcttagaaagtgtgtgttttgaaatatcatttacattcaaaccttcatttagtaaatgctatatttttcagcaatgatatactcatcagttatcacattt 10214745  T
Q  101 agaaaggttatcaacgtaatctctagtaaattatttttaaattttaacacaggtgataagaaaaatgacaatatgatacatttatttttagtatatgaga 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10214746 agaaaggttatcaacgtaatctctagtaaattatttttaaattttaacacaggtgataagaaaaatgacaatatgatacatttatttttagtatatgaga 10214845  T
Q  201 ggactttaactagaaattgcatatttgactcactttcctaaagtaaaaatgtatata 257  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  10214846 ggactttaactagaaattgcatatttgactcactttcctaaggtaaaaatgtatata 10214902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 1 - 257
Target Start/End: Original strand, 10223387 - 10223643
Alignment:
Q  1 tcttagaaagtgtgtgttttgaaatatcatttacattcaaaccttcatttagtaaatgctatatttttcagcaatgatatactcatcagttatcacattt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10223387 tcttagaaagtgtgtgttttgaaatatcatttacattcaaaccttcatttagtaaatgctatatttttcagcaatgatatactcatcagttatcacattt 10223486  T
Q  101 agaaaggttatcaacgtaatctctagtaaattatttttaaattttaacacaggtgataagaaaaatgacaatatgatacatttatttttagtatatgaga 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10223487 agaaaggttatcaacgtaatctctagtaaattatttttaaattttaacacaggtgataagaaaaatgacaatatgatacatttatttttagtatatgaga 10223586  T
Q  201 ggactttaactagaaattgcatatttgactcactttcctaaagtaaaaatgtatata 257  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  10223587 ggactttaactagaaattgcatatttgactcactttcctaaggtaaaaatgtatata 10223643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 101 - 247
Target Start/End: Original strand, 10180264 - 10180409
Alignment:
Q  101 agaaaggttatcaacgtaatctctagtaaattatttttaaattttaacacaggtgataagaaaaatgacaatatgatacatttatttttagtatatgaga 200  Q
    ||||||||||||||| || ||||   || |||  |||| ||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||    
T  10180264 agaaaggttatcaacatactctcagatatatttatttttaattttaacacaggtgataagaaaaatgaca-tatgctacatttatttttagtatatgaga 10180362  T
Q  201 ggactttaactagaaattgcatatttgactcactttcctaaagtaaa 247  Q
    |||||||||| ||||||||||||||||| ||||||||||||||||||    
T  10180363 ggactttaacgagaaattgcatatttgaatcactttcctaaagtaaa 10180409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 135 - 247
Target Start/End: Original strand, 10123644 - 10123755
Alignment:
Q  135 ttttaaattttaacacaggtgataagaaaaatgacaatatgatacatttatttttagtatatgagaggactttaactagaaattgcatatttgactcact 234  Q
    |||| ||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||    
T  10123644 tttttaattttaacacaggtgataagaaaaatgaca-tatgctacatttatttttagtatatgagaggactttaacgagaaattgcatatttgaatcact 10123742  T
Q  235 ttcctaaagtaaa 247  Q
    |||||||||||||    
T  10123743 ttcctaaagtaaa 10123755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 101 - 247
Target Start/End: Original strand, 10256379 - 10256524
Alignment:
Q  101 agaaaggttatcaacgtaatctctagtaaattatttttaaattttaacacaggtgataagaaaaatgacaatatgatacatttatttttagtatatgaga 200  Q
    ||||||||||||||| || ||||   || |||  |||| ||||||||||||||||||||||||||||||| |||| ||| ||||||||||||||||||||    
T  10256379 agaaaggttatcaacatactctcagatatatttatttttaattttaacacaggtgataagaaaaatgaca-tatgctacgtttatttttagtatatgaga 10256477  T
Q  201 ggactttaactagaaattgcatatttgactcactttcctaaagtaaa 247  Q
    |||||||||| ||||||||||||||||| ||||||||||||||||||    
T  10256478 ggactttaacgagaaattgcatatttgaatcactttcctaaagtaaa 10256524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 13 - 115
Target Start/End: Original strand, 10018949 - 10019052
Alignment:
Q  13 tgtgttttgaaatatcatttacattcaaaccttcatttagtaaatgctatatttttcagcaatgatatactcatcagttatcacatttagaaa-ggttat 111  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||| ||||||||||| ||||||    
T  10018949 tgtgttttgaaatatcatttacgttcaaaccttcatttagtaaatgctataattttcagtaatgatatactcatcagttattacatttagaaagggttat 10019048  T
Q  112 caac 115  Q
    ||||    
T  10019049 caac 10019052  T

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Target: chr3; HSP #8
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 13 - 115
Target Start/End: Original strand, 10256263 - 10256366
Alignment:
Q  13 tgtgttttgaaatatcatttacattcaaaccttcatttagtaaatgctatatttttcagcaatgatatactcatcagttatcacatttagaaa-ggttat 111  Q
    |||||||||||||||||||||| ||||||| |||||||||||||||||||| ||||||| ||||||||||||||||||||| ||||||||||| ||||||    
T  10256263 tgtgttttgaaatatcatttacgttcaaactttcatttagtaaatgctataattttcagtaatgatatactcatcagttattacatttagaaagggttat 10256362  T
Q  112 caac 115  Q
    ||||    
T  10256363 caac 10256366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 15 - 115
Target Start/End: Original strand, 10180148 - 10180251
Alignment:
Q  15 tgttttgaaatatcatttacattc--aaaccttcatttagtaaatgctatatttttcagcaatgatatactcatcagttatcacatttagaaa-ggttat 111  Q
    |||||||||||||||||||| |||  |||||||| |||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| ||||||    
T  10180148 tgttttgaaatatcatttacgttctcaaaccttcgtttagtaaatgctataattttcagtaatgatatactcatcagttatcacatttagaaagggttat 10180247  T
Q  112 caac 115  Q
    ||||    
T  10180248 caac 10180251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 13 - 115
Target Start/End: Original strand, 10123496 - 10123599
Alignment:
Q  13 tgtgttttgaaatatcatttacattcaaaccttc-atttagtaaatgctatatttttcagcaatgatatactcatcagttatcacatttagaaa-ggtta 110  Q
    ||||||||||||||||||||||  |||||||||  ||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||| |||||    
T  10123496 tgtgttttgaaatatcatttacgatcaaaccttatatttagtaaatgctatacttttca-caatgatatactcatcagttatcacatttagaaagggtta 10123594  T
Q  111 tcaac 115  Q
    |||||    
T  10123595 tcaac 10123599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 7 - 66
Target Start/End: Original strand, 10076222 - 10076281
Alignment:
Q  7 aaagtgtgtgttttgaaatatcatttacattcaaaccttcatttagtaaatgctatattt 66  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  10076222 aaagtgtgtgttttgaaatatcatttacattcaaaccttcatttagtaaattctatattt 10076281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 10439112 - 10439055
Alignment:
Q  1 tcttagaaagtgtgtgttttgaaatatcatttacattcaaaccttcatttagtaaatg 58  Q
    |||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  10439112 tcttagcaagtgtgtgttttgaaatatcatttacgttcaaaccttcatttagtaaatg 10439055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 195 - 247
Target Start/End: Original strand, 10028802 - 10028854
Alignment:
Q  195 atgagaggactttaactagaaattgcatatttgactcactttcctaaagtaaa 247  Q
    |||||||||||||||| ||||||||||||||||| ||||||||||||||||||    
T  10028802 atgagaggactttaacgagaaattgcatatttgaatcactttcctaaagtaaa 10028854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 101 - 195
Target Start/End: Original strand, 10019065 - 10019158
Alignment:
Q  101 agaaaggttatcaacgtaatctctagtaaattatttttaaattttaacacaggtgataagaaaaatgacaatatgatacatttatttttagtata 195  Q
    ||||||||||||||| || ||||   || |||  |||| |||||||||||||||||||||||||||||| ||||| ||| |||||||||||||||    
T  10019065 agaaaggttatcaacatactctcagatatatttatttttaattttaacacaggtgataagaaaaatgac-atatgctacgtttatttttagtata 10019158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 25 - 76
Target Start/End: Original strand, 10516457 - 10516508
Alignment:
Q  25 tatcatttacattcaaaccttcatttagtaaatgctatatttttcagcaatg 76  Q
    |||||||||| |||| ||||||||||||| |||| |||||||||||||||||    
T  10516457 tatcatttacgttcataccttcatttagtcaatgttatatttttcagcaatg 10516508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 216 - 257
Target Start/End: Original strand, 11768325 - 11768366
Alignment:
Q  216 attgcatatttgactcactttcctaaagtaaaaatgtatata 257  Q
    ||||||||||||| ||||||||| ||||||||||||||||||    
T  11768325 attgcatatttgaatcactttccaaaagtaaaaatgtatata 11768366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 253; Significance: 1e-141; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 1 - 257
Target Start/End: Original strand, 26793229 - 26793485
Alignment:
Q  1 tcttagaaagtgtgtgttttgaaatatcatttacattcaaaccttcatttagtaaatgctatatttttcagcaatgatatactcatcagttatcacattt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26793229 tcttagaaagtgtgtgttttgaaatatcatttacattcaaaccttcatttagtaaatgctatatttttcagcaatgatatactcatcagttatcacattt 26793328  T
Q  101 agaaaggttatcaacgtaatctctagtaaattatttttaaattttaacacaggtgataagaaaaatgacaatatgatacatttatttttagtatatgaga 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26793329 agaaaggttatcaacgtaatctctagtaaattatttttaaattttaacacaggtgataagaaaaatgacaatatgatacatttatttttagtatatgaga 26793428  T
Q  201 ggactttaactagaaattgcatatttgactcactttcctaaagtaaaaatgtatata 257  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  26793429 ggactttaactagaaattgcatatttgactcactttcctaaggtaaaaatgtatata 26793485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 26818745 - 26818985
Alignment:
Q  1 tcttagaaagtgtgtgttttgaaatatcatttacattcaaaccttcatttagtaaatgctatatttttcagcaatgatatactcatcagttatcacattt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26818745 tcttagaaagtgtgtgttttgaaatatcatttacattcaaaccttcatttagtaaatgctatatttttcagcaatgatatactcatcagttatcacattt 26818844  T
Q  101 agaaaggttatcaacgtaatctctagtaaattatttttaaattttaacacaggtgataagaaaaatgacaatatgatacatttatttttagtatatgaga 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26818845 agaaaggttatcaacgtaatctctagtaaattatttttaaattttaacacaggtgataagaaaaatgacaatatgatacatttatttttagtatatgaga 26818944  T
Q  201 ggactttaactagaaattgcatatttgactcactttcctaa 241  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  26818945 ggactttaactagaaattgcatatttgactcactttcctaa 26818985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0083 (Bit Score: 144; Significance: 9e-76; HSPs: 1)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 144; E-Value: 9e-76
Query Start/End: Original strand, 12 - 257
Target Start/End: Complemental strand, 51042 - 50807
Alignment:
Q  12 gtgtgttttgaaatatcatttacattcaaaccttcatttagtaaatgc-tatatttttcagcaatgatatactcatcagttatcacatttagaaaggtta 110  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||| |          ||| ||||    
T  51042 gtgtgttttgaaatatcatttacattcaaaccttcatttagtaaatgcatatatttttcagcaatgatatgctcatcagtaa----------aaaagtta 50953  T
Q  111 tcaacgtaatctctagtaaattatttttaaattttaacacaggtgataagaaaaatgacaatatgatacatttatttttagtatatgagaggactttaac 210  Q
    ||||| |||||||||||| ||||||||||| ||| ||||||| |||||||||||||||||| |||||||||||| |||| ||||||||||||| ||||||    
T  50952 tcaacataatctctagtacattatttttaattttgaacacagatgataagaaaaatgacaacatgatacattta-ttttcgtatatgagaggagtttaac 50854  T
Q  211 tagaaattgcatatttgactcactttcctaaagtaaaaatgtatata 257  Q
    |||||||||||||||||| ||||||||| ||||||||||||||||||    
T  50853 tagaaattgcatatttgaatcactttccaaaagtaaaaatgtatata 50807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 26892394 - 26892460
Alignment:
Q  1 tcttagaaagtgtgtgttttgaaatatcatttacattcaaaccttcatttagtaaatgctatatttt 67  Q
    |||||| |||| ||||||||||||| |||||||| ||||||||||| |||| |||||| ||||||||    
T  26892394 tcttagcaagtctgtgttttgaaatgtcatttacgttcaaaccttcttttactaaatgatatatttt 26892460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 26897833 - 26897899
Alignment:
Q  1 tcttagaaagtgtgtgttttgaaatatcatttacattcaaaccttcatttagtaaatgctatatttt 67  Q
    |||||| |||| ||||||||||||| |||||||| ||||||||||| |||| |||||| ||||||||    
T  26897833 tcttagcaagtctgtgttttgaaatgtcatttacgttcaaaccttcttttactaaatgatatatttt 26897899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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