View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19475_low_69 (Length: 252)
Name: NF19475_low_69
Description: NF19475
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19475_low_69 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 13 - 252
Target Start/End: Original strand, 21829634 - 21829873
Alignment:
| Q |
13 |
aatatgttagacttccgcaacaacatgacgatctaaattagtttaaatcttaattaaa-gatgtgcccataattattgaccaacgtacaatgtctcaaat |
111 |
Q |
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| T |
21829634 |
aatatgttagacttccgcaacaacataacgatctaaa---gtttaaatcttaattaaaagatgtttccataattagtgaccaacgtacaatgtctcaaat |
21829730 |
T |
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| Q |
112 |
aggagtatgtaatttctaaaataaaataaaaattatgttagtagtcctcataaaataagaattgatgttagtagttttccttttaacttatttggatttg |
211 |
Q |
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| T |
21829731 |
aggagtatgtaatttctaaaataaaataaaaattatgttagtagtcctcataaaataagaattgatgttagtagttttccttttaacttatttggatttg |
21829830 |
T |
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| Q |
212 |
gattgg--atattactcttcttttaactaaaagtttacataaa |
252 |
Q |
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|||||| ||||||||||||||| |||| |||||||||||||| |
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| T |
21829831 |
gattggatatattactcttctttaaacttaaagtttacataaa |
21829873 |
T |
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