View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19475_low_70 (Length: 252)

Name: NF19475_low_70
Description: NF19475
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19475_low_70
NF19475_low_70
[»] chr2 (4 HSPs)
chr2 (21-252)||(16232340-16232574)
chr2 (21-252)||(34690999-34691227)
chr2 (21-252)||(34713411-34713639)
chr2 (130-202)||(33861059-33861131)
[»] chr1 (11 HSPs)
chr1 (21-222)||(38137745-38137945)
chr1 (21-212)||(43045204-43045394)
chr1 (21-212)||(43045657-43045847)
chr1 (21-212)||(43066560-43066750)
chr1 (21-212)||(43084085-43084275)
chr1 (22-212)||(45993378-45993567)
chr1 (21-221)||(45983597-45983790)
chr1 (21-212)||(3300941-3301130)
chr1 (24-89)||(7890932-7890993)
chr1 (137-212)||(40034689-40034767)
chr1 (21-89)||(7888664-7888728)
[»] chr4 (1 HSPs)
chr4 (24-201)||(4231691-4231864)
[»] chr8 (3 HSPs)
chr8 (21-89)||(1846728-1846792)
chr8 (21-89)||(4620026-4620090)
chr8 (137-212)||(4787457-4787535)
[»] chr5 (1 HSPs)
chr5 (137-224)||(16349337-16349427)


Alignment Details
Target: chr2 (Bit Score: 213; Significance: 1e-117; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 21 - 252
Target Start/End: Complemental strand, 16232574 - 16232340
Alignment:
Q  21 cccggacacagggatttcattaattaagaacatgatcaccgggacctccgaagctgactgtgctgttctagtcatcaattccactactctcagtttgcaa 120  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  16232574 cccggacacagggatttcattaattaagaacatgatcatcgggacctccgaagctgactgtgctgttctagtcatcaattccactactctcggtttgcaa 16232475  T
Q  121 gctggttggtctaaggatggtcagacctgggaacatgctctacttgcgtacactcttggtgtgaggcaaatgatctg---ctgcaacaaggtattgacat 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||    
T  16232474 gctggttggtctaaggatggtcagacctgggaacatgctctacttgcgtacactcttggtgtgaggcaaatgatctgctgctgcaacaaggtattgacat 16232375  T
Q  218 tttcagcatctgattattatttttataattcattt 252  Q
    |||||||||||||||||||||||||||||||||||    
T  16232374 tttcagcatctgattattatttttataattcattt 16232340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 21 - 252
Target Start/End: Complemental strand, 34691227 - 34690999
Alignment:
Q  21 cccggacacagggatttcattaattaagaacatgatcaccgggacctccgaagctgactgtgctgttctagtcatcaattccactactctcagtttgcaa 120  Q
    |||||||||||||||||||||||    |||||||||||||||||||||| ||||||||||||||||||| |||||  |||| ||||||    |||||| |    
T  34691227 cccggacacagggatttcattaa----gaacatgatcaccgggacctcccaagctgactgtgctgttctcgtcattgattcgactactagaggtttgcga 34691132  T
Q  121 gctggttggtctaaggatggtcagacctgggaacatgctctacttgcgtacactcttggtgtgaggcaaatgatctg---ctgcaacaaggtattgaca- 216  Q
    ||||||||||||||| ||||||||||||||||||||||||| ||||| | |||||||||||||||||||||||||||   ||||||||||||||| | |     
T  34691131 gctggttggtctaagaatggtcagacctgggaacatgctcttcttgccttcactcttggtgtgaggcaaatgatctgctgctgcaacaaggtatttatat 34691032  T
Q  217 ttttcagcatctgattattatttttataattcattt 252  Q
    |||||||||| ||   ||||||||||||||||||||    
T  34691031 ttttcagcatttg---attatttttataattcattt 34690999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 21 - 252
Target Start/End: Complemental strand, 34713639 - 34713411
Alignment:
Q  21 cccggacacagggatttcattaattaagaacatgatcaccgggacctccgaagctgactgtgctgttctagtcatcaattccactactctcagtttgcaa 120  Q
    |||||||||||||||||||||||    |||||||||||||||||||||| ||||||||||||||||||| |||||  |||| ||||||    |||||| |    
T  34713639 cccggacacagggatttcattaa----gaacatgatcaccgggacctcccaagctgactgtgctgttctcgtcattgattcgactactagaggtttgcga 34713544  T
Q  121 gctggttggtctaaggatggtcagacctgggaacatgctctacttgcgtacactcttggtgtgaggcaaatgatctg---ctgcaacaaggtattgaca- 216  Q
    ||||||||||||||| ||||||||||||||||||||||||| ||||| | |||||||||||||||||||||||||||   ||||||||||||||| | |     
T  34713543 gctggttggtctaagaatggtcagacctgggaacatgctcttcttgccttcactcttggtgtgaggcaaatgatctgctgctgcaacaaggtatttatat 34713444  T
Q  217 ttttcagcatctgattattatttttataattcattt 252  Q
    |||||||||| ||   ||||||||||||||||||||    
T  34713443 ttttcagcatttg---attatttttataattcattt 34713411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 130 - 202
Target Start/End: Complemental strand, 33861131 - 33861059
Alignment:
Q  130 tctaaggatggtcagacctgggaacatgctctacttgcgtacactcttggtgtgaggcaaatgatctgctgca 202  Q
    |||||| ||||||||||| | |||||||| || || || | |||||||||||||   ||||||||||||||||    
T  33861131 tctaagcatggtcagacccgtgaacatgcccttctcgcctgcactcttggtgtgcctcaaatgatctgctgca 33861059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 66; Significance: 3e-29; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 21 - 222
Target Start/End: Original strand, 38137745 - 38137945
Alignment:
Q  21 cccggacacagggatttcattaattaagaacatgatcaccgggacctccgaagctgactgtgctgttctagtcatcaattccactactctcagtttgcaa 120  Q
    ||||||||||||||||||||||    |||||||||| |||||||| ||| ||||||||||||||||||| |||||  ||||||| |||   |||||  ||    
T  38137745 cccggacacagggatttcatta----agaacatgattaccgggacgtcccaagctgactgtgctgttctcgtcattgattccacaactggtagttttgaa 38137840  T
Q  121 gctggttggtctaaggatggtcagacctgggaacatgctctacttgcgtacactcttggtgtgaggcaaatgat---ctgctgcaacaaggtattgacat 217  Q
    |||||||  ||| |||| ||||||||||  ||||||||||| ||||| | |  |||||||||| | ||||||||   |||||||||||||||||| | ||    
T  38137841 gctggttattctcaggaaggtcagacctctgaacatgctcttcttgcattcgttcttggtgtgcgccaaatgatctgctgctgcaacaaggtatttatat 38137940  T
Q  218 tttca 222  Q
    |||||    
T  38137941 tttca 38137945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 21 - 212
Target Start/End: Complemental strand, 43045394 - 43045204
Alignment:
Q  21 cccggacacagggatttcattaattaagaacatgatcaccgggacctccgaagctgactgtgctgttctagtcatcaattccactactctcagtttgcaa 120  Q
    |||||||||||||||||||||||    ||||||||||||||| || ||| ||||||| ||||| |||||  ||||  |||||||||||    ||||  ||    
T  43045394 cccggacacagggatttcattaa----gaacatgatcaccggaacatcccaagctgattgtgccgttctcatcattgattccactactggtggttttgaa 43045299  T
Q  121 gctggttggtctaaggatggtcagacctgggaacatgctctacttgcgtacactcttggtgtgaggcaaatgatctgc---tgcaacaaggtatt 212  Q
    || |||   |||||||||||||||||| | ||||||||||| ||||| | |||||||||||||| |||||||||||||   ||||||||||||||    
T  43045298 gccggtatttctaaggatggtcagacccgtgaacatgctctccttgctttcactcttggtgtgaagcaaatgatctgctgttgcaacaaggtatt 43045204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 21 - 212
Target Start/End: Complemental strand, 43045847 - 43045657
Alignment:
Q  21 cccggacacagggatttcattaattaagaacatgatcaccgggacctccgaagctgactgtgctgttctagtcatcaattccactactctcagtttgcaa 120  Q
    |||||||||||||||||||||||    ||||||||||||||| || ||| ||||||| ||||| |||||  ||||  |||||||||||    ||||  ||    
T  43045847 cccggacacagggatttcattaa----gaacatgatcaccggaacatcccaagctgattgtgccgttctcatcattgattccactactggtggttttgaa 43045752  T
Q  121 gctggttggtctaaggatggtcagacctgggaacatgctctacttgcgtacactcttggtgtgaggcaaatgatctgc---tgcaacaaggtatt 212  Q
    || |||   |||||||||||||||||| | ||||||||||| ||||| | |||||||||||||| |||||||||||||   ||||||||||||||    
T  43045751 gccggtatttctaaggatggtcagacccgtgaacatgctctccttgctttcactcttggtgtgaagcaaatgatctgctgttgcaacaaggtatt 43045657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 21 - 212
Target Start/End: Original strand, 43066560 - 43066750
Alignment:
Q  21 cccggacacagggatttcattaattaagaacatgatcaccgggacctccgaagctgactgtgctgttctagtcatcaattccactactctcagtttgcaa 120  Q
    |||||||||||||||||||||||    ||||||||||||||| || ||| ||||||| ||||| |||||  ||||  |||||||||||    ||||  ||    
T  43066560 cccggacacagggatttcattaa----gaacatgatcaccggaacatcccaagctgattgtgccgttctcatcattgattccactactggtggttttgaa 43066655  T
Q  121 gctggttggtctaaggatggtcagacctgggaacatgctctacttgcgtacactcttggtgtgaggcaaatgatctgc---tgcaacaaggtatt 212  Q
    || |||   |||||||||||||||||| | ||||||||||| ||||| | |||||||||||||| |||||||||||||   ||||||||||||||    
T  43066656 gccggtatttctaaggatggtcagacccgtgaacatgctctccttgctttcactcttggtgtgaagcaaatgatctgctgttgcaacaaggtatt 43066750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 21 - 212
Target Start/End: Complemental strand, 43084275 - 43084085
Alignment:
Q  21 cccggacacagggatttcattaattaagaacatgatcaccgggacctccgaagctgactgtgctgttctagtcatcaattccactactctcagtttgcaa 120  Q
    |||||||||||||||||||||||    ||||||||||||||| || ||| ||||||| ||||| |||||  ||||  |||||||||||    ||||  ||    
T  43084275 cccggacacagggatttcattaa----gaacatgatcaccggaacatcccaagctgattgtgccgttctcatcattgattccactactggtggttttgaa 43084180  T
Q  121 gctggttggtctaaggatggtcagacctgggaacatgctctacttgcgtacactcttggtgtgaggcaaatgatctgc---tgcaacaaggtatt 212  Q
    || |||   |||||||||||||||||| | ||||||||||| ||||| | |||||||||||||| |||||||||||||   ||||||||||||||    
T  43084179 gccggtatttctaaggatggtcagacccgtgaacatgctctccttgctttcactcttggtgtgaagcaaatgatctgctgttgcaacaaggtatt 43084085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 22 - 212
Target Start/End: Original strand, 45993378 - 45993567
Alignment:
Q  22 ccggacacagggatttcattaattaagaacatgatcaccgggacctccgaagctgactgtgctgttctagtcatcaattccactactctcagtttgcaag 121  Q
    |||||||||||||||||||||    ||||||||||||||||||| ||| ||||||| |||||||||||  ||||  ||||||||||||   ||||  |||    
T  45993378 ccggacacagggatttcatta----agaacatgatcaccgggacgtcccaagctgattgtgctgttctcatcattgattccactactcgtggttttgaag 45993473  T
Q  122 ctggttggtctaaggatggtcagacctgggaacatgctctacttgcgtacactcttggtgtgaggcaaatgatc---tgctgcaacaaggtatt 212  Q
    | |||   || ||||||||||||||  | ||||||||||| ||||| | ||||||||||||||  |||||||||   |||||||||||||||||    
T  45993474 ccggtatttcaaaggatggtcagactcgtgaacatgctcttcttgccttcactcttggtgtgaatcaaatgatctgttgctgcaacaaggtatt 45993567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 21 - 221
Target Start/End: Original strand, 45983597 - 45983790
Alignment:
Q  21 cccggacacagggatttcattaattaagaacatgatcaccgggacctccgaagctgactgtgctgttctagtcatcaattccactactctcagtttgcaa 120  Q
    ||||||||||||||||||||||    |||||||||||||||| || ||| ||||||||||||||||||| |||||  |||||||||||    ||||  ||    
T  45983597 cccggacacagggatttcatta----agaacatgatcaccggaacgtcccaagctgactgtgctgttctcgtcattgattccactactggtggttttgaa 45983692  T
Q  121 gctggttggtctaaggatggtcagacctgggaacatgctctacttgcgtacactcttggtgtgaggcaaatgat---ctgctgcaacaaggtattgacat 217  Q
    || ||      || | ||||||||||| | ||||||||||| ||||| | ||||||||||||||  ||||||||   |||||||||||||||||| | ||    
T  45983693 gccgg------tatgaatggtcagacccgtgaacatgctcttcttgccttcactcttggtgtgaatcaaatgatctgctgctgcaacaaggtatttatat 45983786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 21 - 212
Target Start/End: Complemental strand, 3301130 - 3300941
Alignment:
Q  21 cccggacacagggatttcattaattaagaacatgatcaccgggacctccgaagctgactgtgctgttctagtcatcaattccactactctcagtttgcaa 120  Q
    |||||||||||||||||||||||    ||||||||| || || || ||| ||||||| |||||||||||  ||||  ||||||||||     ||||  ||    
T  3301130 cccggacacagggatttcattaa----gaacatgattactggaacatcccaagctgattgtgctgttctgatcattgattccactaccggtggttttgaa 3301035  T
Q  121 gctggttggtctaaggatggtcagacctgggaacatgctctacttgcgtacactcttggtgtgaggcaaatga--tctgctgcaacaaggtatt 212  Q
    || |||   || |||||||| |||||| | ||||| ||||| ||||| | |||||||||||||| ||||||||  | |||||||||||||||||    
T  3301034 gccggtatatcaaaggatgggcagacccgtgaacacgctcttcttgctttcactcttggtgtgaagcaaatgatttttgctgcaacaaggtatt 3300941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 24 - 89
Target Start/End: Original strand, 7890932 - 7890993
Alignment:
Q  24 ggacacagggatttcattaattaagaacatgatcaccgggacctccgaagctgactgtgctgttct 89  Q
    |||||||||||||||||||    ||||||||||||| ||  | |||||||||||||||||||||||    
T  7890932 ggacacagggatttcatta----agaacatgatcactggagcgtccgaagctgactgtgctgttct 7890993  T

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Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 137 - 212
Target Start/End: Original strand, 40034689 - 40034767
Alignment:
Q  137 atggtcagacctgggaacatgctctacttgcgtacactcttggtgtgaggcaaatgatctgc---tgcaacaaggtatt 212  Q
    |||||||||||   ||||||||||| ||||| || |||||||||||||  ||||||||||||   ||||||||||||||    
T  40034689 atggtcagaccactgaacatgctcttcttgcctatactcttggtgtgaatcaaatgatctgctgctgcaacaaggtatt 40034767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 21 - 89
Target Start/End: Original strand, 7888664 - 7888728
Alignment:
Q  21 cccggacacagggatttcattaattaagaacatgatcaccgggacctccgaagctgactgtgctgttct 89  Q
    |||||||||||||||||||| ||    |||||||||||||||| | || |||||||| |||||||||||    
T  7888664 cccggacacagggatttcatcaa----gaacatgatcaccggggcgtctgaagctgattgtgctgttct 7888728  T

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Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 24 - 201
Target Start/End: Complemental strand, 4231864 - 4231691
Alignment:
Q  24 ggacacagggatttcattaattaagaacatgatcaccgggacctccgaagctgactgtgctgttctagtcatcaattccactactctcagtttgcaagct 123  Q
    ||||||||||||||||||||    ||||||||| || || || ||| ||||||| |||||||||||  ||||  ||||||| |||    ||||  |||||    
T  4231864 ggacacagggatttcattaa----gaacatgattactggtacatcccaagctgattgtgctgttctcatcattgattccaccactggtggttttgaagct 4231769  T
Q  124 ggttggtctaaggatggtcagacctgggaacatgctctacttgcgtacactcttggtgtgaggcaaatgatctgctgc 201  Q
    |||   || ||||||||||||||  | ||||||||||| ||||| | |||||||||||||||||||||||||||||||    
T  4231768 ggtatttccaaggatggtcagactcgtgaacatgctctccttgctttcactcttggtgtgaggcaaatgatctgctgc 4231691  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 21 - 89
Target Start/End: Complemental strand, 1846792 - 1846728
Alignment:
Q  21 cccggacacagggatttcattaattaagaacatgatcaccgggacctccgaagctgactgtgctgttct 89  Q
    |||||||||||||||||||||||    |||||||||||||||  | ||||||||||||||||| |||||    
T  1846792 cccggacacagggatttcattaa----gaacatgatcaccggagcatccgaagctgactgtgccgttct 1846728  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 21 - 89
Target Start/End: Complemental strand, 4620090 - 4620026
Alignment:
Q  21 cccggacacagggatttcattaattaagaacatgatcaccgggacctccgaagctgactgtgctgttct 89  Q
    ||||||||||| |||||||||||    ||||||||||||||| || ||| |||||||||||||||||||    
T  4620090 cccggacacagagatttcattaa----gaacatgatcaccggaacatcccaagctgactgtgctgttct 4620026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 137 - 212
Target Start/End: Original strand, 4787457 - 4787535
Alignment:
Q  137 atggtcagacctgggaacatgctctacttgcgtacactcttggtgtgaggcaaatgatctgc---tgcaacaaggtatt 212  Q
    |||||||||||   ||||||||||| ||||| | |||| ||||||||| |||||||||||||   ||||||||||||||    
T  4787457 atggtcagacccttgaacatgctcttcttgccttcactgttggtgtgaagcaaatgatctgctgctgcaacaaggtatt 4787535  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 137 - 224
Target Start/End: Complemental strand, 16349427 - 16349337
Alignment:
Q  137 atggtcagacctgggaacatgctctacttgcgtacactcttggtgtgaggcaaatgatctg---ctgcaacaaggtattgacattttcagc 224  Q
    ||||||||| | | ||||||||||| | ||| ||| |||||||||| | ||||||||||||   ||||||||||||||| | |||||||||    
T  16349427 atggtcagatccgtgaacatgctctccatgcttactctcttggtgtcaagcaaatgatctgctgctgcaacaaggtattcatattttcagc 16349337  T

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