View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19475_low_75 (Length: 249)
Name: NF19475_low_75
Description: NF19475
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19475_low_75 |
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Alignment Details
Target: chr3 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 14552173 - 14551933
Alignment:
| Q |
1 |
cagcaaagatcagcctcccctccatgcatgcttctgctttggctaacgaatctgctatttagtttccttttctgtgtgtatgtacaaatgacatcttttt |
100 |
Q |
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| T |
14552173 |
cagcaaagatcagcctcccctccatgcatgcttctgctttggctaacgaatctgctatttagtttccttttctgtgtgtatgtacaaatgacatcttttt |
14552074 |
T |
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| Q |
101 |
tagcaccatctttaggttacttaccttagtagaataaaagtggagattccacggacaatcttatttgttctgaatccacacaagtctatttttggtgtcc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14552073 |
tagcaccatctttaggttacttaccttagtagaataaaagtggagattccacggacaatcttatttgttctgaatccacacaagtctatttttggtgtcc |
14551974 |
T |
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| Q |
201 |
gattctgctataatctcatcatcttttaaccagattttctt |
241 |
Q |
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| T |
14551973 |
gattctgctataatctcatcatcttttaaccagattttctt |
14551933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 165; Significance: 2e-88; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 9 - 241
Target Start/End: Original strand, 16845469 - 16845700
Alignment:
| Q |
9 |
atcagcctcccctccatgcatgcttctgctttggctaacgaatctgctatttagtttccttttctgtgtgtatgtacaaatgacatcttttttagcacca |
108 |
Q |
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| T |
16845469 |
atcagcctcccctccaagcatgcttctactttggctaacgaatctgctatttagtttccttctctgtgcgtatgtacaaatgacatctttt-tagcacca |
16845567 |
T |
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| Q |
109 |
tctttaggttacttaccttagtagaataaaagtggagattccacggacaatcttatttgttctgaatccacacaagtctatttttggtgtccgattctgc |
208 |
Q |
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| T |
16845568 |
tcattaggttacttacattagtagaataaaagcggagattccacggacaatcttatttattctgaatccatagaagtatatttttggtgtccgattttac |
16845667 |
T |
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| Q |
209 |
tataatctcatcatcttttaaccagattttctt |
241 |
Q |
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| T |
16845668 |
tataatctcatcatcttttgacctgattttctt |
16845700 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 93 - 240
Target Start/End: Original strand, 37395078 - 37395223
Alignment:
| Q |
93 |
atcttttttagcaccatctttaggttacttaccttagtagaataaaagtggagattccacggacaatcttatttgttctgaatccacacaagtctatttt |
192 |
Q |
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||||||||||| |||||| ||| ||||||||||||||||||||||||| ||||||||||| | |||||| |||||||||||||||| | ||| ||||| |
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| T |
37395078 |
atcttttttagtaccatcattatgttacttaccttagtagaataaaagcggagattccac--agaatcttctttgttctgaatccactctagtgcatttt |
37395175 |
T |
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| Q |
193 |
tggtgtccgattctgctataatctcatcatcttttaaccagattttct |
240 |
Q |
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| T |
37395176 |
cagagttcgattccaatataatctcaccatcttttaaccaaattttct |
37395223 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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