View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19475_low_78 (Length: 243)
Name: NF19475_low_78
Description: NF19475
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19475_low_78 |
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Alignment Details
Target: chr8 (Bit Score: 168; Significance: 4e-90; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 20 - 229
Target Start/End: Complemental strand, 11804988 - 11804777
Alignment:
| Q |
20 |
gtttcaaccaacacattctcatttgaactaaaaacacgaattttggtttttgaaggggaaacaaaatcaaaactcaaagataaaattggaatctacgttt |
119 |
Q |
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| T |
11804988 |
gtttcaaccaacacattctcatttgaactaaaaacacaaattttggtttttgaaggggaaacaaaatcaaaactcaaagataaaattgtaatttacgttt |
11804889 |
T |
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| Q |
120 |
aataattaatgtttttgtttacnnnnnnnagtaactatgcttgtggggtcattattgctattgttcttc--ctctctctcaccaattctctctcatgcac |
217 |
Q |
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| T |
11804888 |
aataattaatgtttttgtttactttttttagtaactatgcttgtggggtcattattgctattgttcttcctctctctctcaccaattctctctcatgcac |
11804789 |
T |
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| Q |
218 |
cacttcttccat |
229 |
Q |
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|||||||||||| |
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| T |
11804788 |
cacttcttccat |
11804777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 82 - 135
Target Start/End: Original strand, 283013 - 283066
Alignment:
| Q |
82 |
aaaatcaaaactcaaagataaaattggaatctacgtttaataattaatgttttt |
135 |
Q |
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| T |
283013 |
aaaatcgaaacttaaggataaaattgtaatttatgtttaataattaatgttttt |
283066 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 82 - 135
Target Start/End: Complemental strand, 632839 - 632786
Alignment:
| Q |
82 |
aaaatcaaaactcaaagataaaattggaatctacgtttaataattaatgttttt |
135 |
Q |
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| T |
632839 |
aaaatcgaaacttaaggataaaattgtaatttatgtttaataattaatgttttt |
632786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 82 - 135
Target Start/End: Complemental strand, 818642 - 818589
Alignment:
| Q |
82 |
aaaatcaaaactcaaagataaaattggaatctacgtttaataattaatgttttt |
135 |
Q |
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|||||| ||||| || |||||||||| ||| || |||||||||||||||||||| |
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| T |
818642 |
aaaatcgaaacttaaggataaaattgtaatttatgtttaataattaatgttttt |
818589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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