View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19475_low_9 (Length: 546)

Name: NF19475_low_9
Description: NF19475
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19475_low_9
NF19475_low_9
[»] chr1 (3 HSPs)
chr1 (1-218)||(24820289-24820506)
chr1 (462-524)||(35241154-35241216)
chr1 (217-294)||(14185525-14185602)
[»] chr7 (3 HSPs)
chr7 (5-97)||(37361000-37361092)
chr7 (230-297)||(37361311-37361378)
chr7 (89-164)||(37361234-37361309)
[»] chr6 (3 HSPs)
chr6 (103-169)||(18331314-18331380)
chr6 (239-297)||(18331401-18331459)
chr6 (251-295)||(32445304-32445348)
[»] chr2 (2 HSPs)
chr2 (103-169)||(38945241-38945307)
chr2 (239-297)||(38945328-38945386)
[»] chr3 (1 HSPs)
chr3 (96-205)||(55352450-55352559)
[»] chr5 (1 HSPs)
chr5 (96-205)||(18447268-18447377)


Alignment Details
Target: chr1 (Bit Score: 214; Significance: 1e-117; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 24820506 - 24820289
Alignment:
Q  1 agacaaaaggatcacatatagtttcaatcacacaacttacaaacaattaaacccaatagaaaccatgcaattttgccaagcatcacttcaaaaaatatta 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24820506 agacaaaaggatcacatatagtttcaatcacacaacttacaaacaattaaacccaatagaaaccatgcaattttgccaagcatcacttcaaaaaatatta 24820407  T
Q  101 aaccatgtaaatcaccgacttgtcaaaatttaagaaagagattagaatacacacatatgacagaaactcacatatgtataacttgaaatttgaaacctat 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  24820406 aaccatgtaaatcaccgacttgtcaaaatttaagaaagagattagaatacacgcatatgacagaaactcacatatgtataacttgaaatttgaaacctat 24820307  T
Q  201 agaaggagacacccacac 218  Q
    ||||||||||||||||||    
T  24820306 agaaggagacacccacac 24820289  T

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Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 462 - 524
Target Start/End: Original strand, 35241154 - 35241216
Alignment:
Q  462 ttgtttattgatacacatagcaatctatacccagcttactataatagtatatgcaattagagg 524  Q
    ||||||||||||| |||||||||||||||| |||||||| ||||||| || ||||||||||||    
T  35241154 ttgtttattgatatacatagcaatctatactcagcttacaataatagcatctgcaattagagg 35241216  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 217 - 294
Target Start/End: Complemental strand, 14185602 - 14185525
Alignment:
Q  217 acaaagattaaagtaatgaaacttaaaatctaccattacattttgtaaaactaatcacaacatttataggtagtttaa 294  Q
    |||||||||||| || |  |||||||  ||||| ||  |||| | |||||||||||||||||| ||||||||||||||    
T  14185602 acaaagattaaactattataacttaatgtctactatatcattctttaaaactaatcacaacatgtataggtagtttaa 14185525  T

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Target: chr7 (Bit Score: 57; Significance: 1e-23; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 5 - 97
Target Start/End: Original strand, 37361000 - 37361092
Alignment:
Q  5 aaaaggatcacatatagtttcaatcacacaacttacaaacaattaaacccaatagaaaccatgcaattttgccaagcatcacttcaaaaaata 97  Q
    |||||||||||||| ||||||||||||||||||||||||  | |||| |||||||||| | |||||||  |||||||||||||||||||||||    
T  37361000 aaaaggatcacatagagtttcaatcacacaacttacaaaatagtaaaaccaatagaaatcttgcaattaagccaagcatcacttcaaaaaata 37361092  T

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Target: chr7; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 230 - 297
Target Start/End: Original strand, 37361311 - 37361378
Alignment:
Q  230 taatgaaacttaaaatctaccattacattttgtaaaactaatcacaacatttataggtagtttaatca 297  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||  ||| ||||||||    
T  37361311 taatgaaacttaaaatctaccattaaattttgtaaaactaatcacaacatttatcagtattttaatca 37361378  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 89 - 164
Target Start/End: Original strand, 37361234 - 37361309
Alignment:
Q  89 caaaaaatattaaaccatgtaaatcaccgacttgtcaaaatttaagaaagagattagaatacacacatatgacaga 164  Q
    |||||||||||||| | |||||||||||   || |||||||||| ||||||||| ||||| ||| | |||||||||    
T  37361234 caaaaaatattaaaacttgtaaatcaccagtttatcaaaatttatgaaagagataagaatgcacgcctatgacaga 37361309  T

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Target: chr6 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 103 - 169
Target Start/End: Original strand, 18331314 - 18331380
Alignment:
Q  103 ccatgtaaatcaccgacttgtcaaaatttaagaaagagattagaatacacacatatgacagaaactc 169  Q
    |||||||| ||||| | || |||||||||||||||||||| |||||| |||||||||||||||||||    
T  18331314 ccatgtaagtcaccaaattatcaaaatttaagaaagagataagaatagacacatatgacagaaactc 18331380  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 239 - 297
Target Start/End: Original strand, 18331401 - 18331459
Alignment:
Q  239 ttaaaatctaccattacattttgtaaaactaatcacaacatttataggtagtttaatca 297  Q
    |||||||||  |||||||||||||||||||  |||||| |||||||||||| |||||||    
T  18331401 ttaaaatctttcattacattttgtaaaacttctcacaatatttataggtagcttaatca 18331459  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 251 - 295
Target Start/End: Complemental strand, 32445348 - 32445304
Alignment:
Q  251 attacattttgtaaaactaatcacaacatttataggtagtttaat 295  Q
    |||||||| | |||| ||||||||||||| |||||||||||||||    
T  32445348 attacattctttaaagctaatcacaacatgtataggtagtttaat 32445304  T

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Target: chr2 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 103 - 169
Target Start/End: Original strand, 38945241 - 38945307
Alignment:
Q  103 ccatgtaaatcaccgacttgtcaaaatttaagaaagagattagaatacacacatatgacagaaactc 169  Q
    |||||||| ||||| | || |||||||||||||||||||| |||||| |||||||||||||||||||    
T  38945241 ccatgtaagtcaccaaattatcaaaatttaagaaagagataagaatagacacatatgacagaaactc 38945307  T

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Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 239 - 297
Target Start/End: Original strand, 38945328 - 38945386
Alignment:
Q  239 ttaaaatctaccattacattttgtaaaactaatcacaacatttataggtagtttaatca 297  Q
    |||||||||  ||||||||||||||||||| |||||||||||||||||||| |||||||    
T  38945328 ttaaaatctttcattacattttgtaaaactcatcacaacatttataggtagcttaatca 38945386  T

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Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 96 - 205
Target Start/End: Complemental strand, 55352559 - 55352450
Alignment:
Q  96 tattaaaccatgtaaatcaccgacttgtcaaaatttaagaaagagattagaatacacacatatgacagaaactcacatatgtataacttgaaatttgaaa 195  Q
    ||||||||||||||||| ||| | |  |||||  ||||||||||| | ||||||||||| |||||||  ||||| |||||||||| ||| | ||||| ||    
T  55352559 tattaaaccatgtaaattaccaaatcatcaaatcttaagaaagaggtaagaatacacacctatgacaacaactctcatatgtatagcttcacatttgcaa 55352460  T
Q  196 cctatagaag 205  Q
    ||||||||||    
T  55352459 cctatagaag 55352450  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 96 - 205
Target Start/End: Original strand, 18447268 - 18447377
Alignment:
Q  96 tattaaaccatgtaaatcaccgacttgtcaaaatttaagaaagagattagaatacacacatatgacagaaactcacatatgtataacttgaaatttgaaa 195  Q
    ||||||||||||||||| ||| | |  |||||  ||||||||||||| ||||||||||| | |||||  ||||| |||||||||| ||| | ||||| ||    
T  18447268 tattaaaccatgtaaattaccaaatcatcaaatcttaagaaagagataagaatacacacctttgacaacaactctcatatgtatagcttcacatttgcaa 18447367  T
Q  196 cctatagaag 205  Q
    ||| ||||||    
T  18447368 cctgtagaag 18447377  T

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