View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19475_low_93 (Length: 210)

Name: NF19475_low_93
Description: NF19475
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19475_low_93
NF19475_low_93
[»] chr2 (13 HSPs)
chr2 (18-187)||(37185520-37185689)
chr2 (96-188)||(28699827-28699919)
chr2 (110-183)||(2548406-2548479)
chr2 (96-177)||(13516071-13516152)
chr2 (102-183)||(31753024-31753105)
chr2 (110-179)||(31510815-31510884)
chr2 (96-180)||(13794508-13794592)
chr2 (95-179)||(44900272-44900356)
chr2 (130-181)||(14438374-14438425)
chr2 (96-183)||(19937641-19937728)
chr2 (96-169)||(29480135-29480208)
chr2 (128-164)||(26383866-26383902)
chr2 (148-188)||(34602077-34602117)
[»] chr8 (9 HSPs)
chr8 (96-183)||(38667755-38667842)
chr8 (96-183)||(30997133-30997220)
chr8 (103-183)||(24118787-24118867)
chr8 (128-183)||(34240718-34240773)
chr8 (135-180)||(11784107-11784152)
chr8 (97-170)||(44134289-44134362)
chr8 (134-180)||(15568509-15568555)
chr8 (128-164)||(17526798-17526834)
chr8 (96-144)||(35520855-35520903)
[»] chr7 (5 HSPs)
chr7 (95-183)||(18298776-18298864)
chr7 (96-155)||(15582951-15583010)
chr7 (102-180)||(2591938-2592015)
chr7 (128-179)||(12257413-12257464)
chr7 (104-159)||(10302121-10302176)
[»] chr5 (5 HSPs)
chr5 (128-183)||(16696034-16696089)
chr5 (132-182)||(27649053-27649103)
chr5 (93-170)||(20568132-20568209)
chr5 (129-178)||(26067249-26067298)
chr5 (140-180)||(27073610-27073650)
[»] chr1 (7 HSPs)
chr1 (125-181)||(3089071-3089127)
chr1 (125-178)||(52909656-52909709)
chr1 (128-183)||(20194759-20194814)
chr1 (102-183)||(30510603-30510684)
chr1 (96-159)||(22224699-22224762)
chr1 (95-181)||(52909857-52909943)
chr1 (102-178)||(51183845-51183921)
[»] chr6 (8 HSPs)
chr6 (96-183)||(24121956-24122043)
chr6 (117-179)||(14510152-14510214)
chr6 (129-183)||(24250902-24250956)
chr6 (128-183)||(20763849-20763904)
chr6 (96-183)||(21384280-21384367)
chr6 (128-171)||(24122891-24122934)
chr6 (128-166)||(34445959-34445997)
chr6 (127-180)||(17536675-17536728)
[»] chr4 (8 HSPs)
chr4 (129-183)||(36539563-36539617)
chr4 (95-183)||(25935080-25935168)
chr4 (128-180)||(49022618-49022670)
chr4 (96-183)||(12195527-12195614)
chr4 (128-181)||(12324553-12324606)
chr4 (130-169)||(36544055-36544094)
chr4 (128-178)||(12327761-12327811)
chr4 (129-170)||(50051309-50051350)
[»] chr3 (3 HSPs)
chr3 (128-181)||(19276361-19276414)
chr3 (117-165)||(28426346-28426394)
chr3 (128-183)||(14064244-14064299)
[»] scaffold0056 (1 HSPs)
scaffold0056 (128-183)||(19096-19151)
[»] scaffold0102 (1 HSPs)
scaffold0102 (128-176)||(25262-25310)
[»] scaffold0474 (1 HSPs)
scaffold0474 (110-177)||(6339-6406)
[»] scaffold0374 (1 HSPs)
scaffold0374 (123-177)||(11966-12020)


Alignment Details
Target: chr2 (Bit Score: 158; Significance: 3e-84; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 18 - 187
Target Start/End: Complemental strand, 37185689 - 37185520
Alignment:
Q  18 tatgctgtggtacaacaggtgaaattttttccaacattaatagatgattgattcatatatacaaataaaaattatatttggacagtcaatacattcctga 117  Q
    ||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  37185689 tatgctgtggtacaacaggtgaaaacttttccaacattaatagatgattgattcatatatacaaataaaaattatatttggacagtcaatacattcttga 37185590  T
Q  118 gggttcgaatgccctctagaaaggcttaggcgccctccagaagggctcctgaggcctaggcgcgccttcc 187  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37185589 gggttcgaatgccctctagaaaggcttaggcgccctccagaagggctcctgaggcctaggcgcgccttcc 37185520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 96 - 188
Target Start/End: Complemental strand, 28699919 - 28699827
Alignment:
Q  96 tggacagtcaatacattcctgagggttcgaatgccctctagaaaggcttaggcgccctccagaagggctcctgaggcctaggcgcgccttccc 188  Q
    ||||| ||||||| |||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  28699919 tggaccgtcaatatattcctaagggctcgaatgccctctagaaaggcttaggcgccctccagaagggctcctgaggcctaggcgcgccctccc 28699827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 110 - 183
Target Start/End: Original strand, 2548406 - 2548479
Alignment:
Q  110 attcctgagggttcgaatgccctctagaaaggcttaggcgccctccagaagggctcctgaggcctaggcgcgcc 183  Q
    |||||| |||| || |||||| |||||||||||| | ||||||||||||| ||||||||||||||||| |||||    
T  2548406 attcctaagggctcaaatgccttctagaaaggctcaagcgccctccagaacggctcctgaggcctaggtgcgcc 2548479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 96 - 177
Target Start/End: Complemental strand, 13516152 - 13516071
Alignment:
Q  96 tggacagtcaatacattcctgagggttcgaatgccctctagaaaggcttaggcgccctccagaagggctcctgaggcctagg 177  Q
    ||||| ||| ||| |||||| || | ||||||||| | |||||||||||||||| ||||||||||||||| |||||||||||    
T  13516152 tggaccgtcgatatattcctaagagctcgaatgccatatagaaaggcttaggcgtcctccagaagggctcatgaggcctagg 13516071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 102 - 183
Target Start/End: Original strand, 31753024 - 31753105
Alignment:
Q  102 gtcaatacattcctgagggttcgaatgccctctagaaaggcttaggcgccctccagaagggctcctgaggcctaggcgcgcc 183  Q
    ||||||| |||||| | || |||||||||||||||||||||| ||| |||||||| ||||||||   |||||||||||||||    
T  31753024 gtcaatatattcctaaaggctcgaatgccctctagaaaggctaaggagccctccataagggctcacaaggcctaggcgcgcc 31753105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 110 - 179
Target Start/End: Complemental strand, 31510884 - 31510815
Alignment:
Q  110 attcctgagggttcgaatgccctctagaaaggcttaggcgccctccagaagggctcctgaggcctaggcg 179  Q
    |||||| ||||  ||||||||||  ||||||||||||| ||||||||||||||||||| | |||||||||    
T  31510884 attcctaagggcacgaatgcccttcagaaaggcttaggtgccctccagaagggctcctaaagcctaggcg 31510815  T

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Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 96 - 180
Target Start/End: Complemental strand, 13794592 - 13794508
Alignment:
Q  96 tggacagtcaatacattcctgagggttcgaatgccctctagaaaggcttaggcgccctccagaagggctcctgaggcctaggcgc 180  Q
    ||||| ||||||| |||||| |||| || || |||||| |||| || |||||||||||||  || ||||||| ||||||||||||    
T  13794592 tggaccgtcaatatattcctaagggctcaaacgccctccagaagggtttaggcgccctccgtaacggctcctaaggcctaggcgc 13794508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 95 - 179
Target Start/End: Complemental strand, 44900356 - 44900272
Alignment:
Q  95 ttggacagtcaatacattcctgagggttcgaatgccctctagaaaggcttaggcgccctccagaagggctcctgaggcctaggcg 179  Q
    |||||| ||||||| |||||  |||  |||||||||||||||||||||||||||| | |  ||| | |||||| |||||||||||    
T  44900356 ttggactgtcaatatattccaaaggactcgaatgccctctagaaaggcttaggcgtcttttagaggtgctccttaggcctaggcg 44900272  T

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Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 130 - 181
Target Start/End: Complemental strand, 14438425 - 14438374
Alignment:
Q  130 cctctagaaaggcttaggcgccctccagaagggctcctgaggcctaggcgcg 181  Q
    |||||| ||||||| || |||||||||||||||||||||||  |||||||||    
T  14438425 cctctaaaaaggctcagacgccctccagaagggctcctgagatctaggcgcg 14438374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 96 - 183
Target Start/End: Complemental strand, 19937728 - 19937641
Alignment:
Q  96 tggacagtcaatacattcctgagggttcgaatgccctctagaaaggcttaggcgccctccagaagggctcctgaggcctaggcgcgcc 183  Q
    ||||| || |||| |||||  |||| |||||| |||| |||||||||||  |||||||| ||||||||||||  ||| ||||||||||    
T  19937728 tggaccgttaatatattcccaagggctcgaataccctatagaaaggcttgagcgccctctagaagggctcctacggcataggcgcgcc 19937641  T

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Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 96 - 169
Target Start/End: Original strand, 29480135 - 29480208
Alignment:
Q  96 tggacagtcaatacattcctgagggttcgaatgccctctagaaaggcttaggcgccctccagaagggctcctga 169  Q
    |||||||| |||| |||||| ||||   ||| | |||||| ||||||| |||||| ||||||||||||||||||    
T  29480135 tggacagttaatatattcctaagggcctgaaagtcctctataaaggctcaggcgctctccagaagggctcctga 29480208  T

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Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 128 - 164
Target Start/End: Original strand, 26383866 - 26383902
Alignment:
Q  128 gccctctagaaaggcttaggcgccctccagaagggct 164  Q
    ||||||||||| ||||||| |||||||||||||||||    
T  26383866 gccctctagaagggcttagacgccctccagaagggct 26383902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 188
Target Start/End: Original strand, 34602077 - 34602117
Alignment:
Q  148 cgccctccagaagggctcctgaggcctaggcgcgccttccc 188  Q
    |||||| ||||||||||| ||||||||||||||||| ||||    
T  34602077 cgcccttcagaagggctcatgaggcctaggcgcgccctccc 34602117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 60; Significance: 9e-26; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 96 - 183
Target Start/End: Original strand, 38667755 - 38667842
Alignment:
Q  96 tggacagtcaatacattcctgagggttcgaatgccctctagaaaggcttaggcgccctccagaagggctcctgaggcctaggcgcgcc 183  Q
    ||||| ||| ||| |||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||| ||||||||    
T  38667755 tggaccgtccatatattcctaagggttcgaatgccctctagaaaggcttatgcgccctccagaagggctcatgaggccttggcgcgcc 38667842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 96 - 183
Target Start/End: Complemental strand, 30997220 - 30997133
Alignment:
Q  96 tggacagtcaatacattcctgagggttcgaatgccctctagaaaggcttaggcgccctccagaagggctcctgaggcctaggcgcgcc 183  Q
    ||||| || |||| |||||| |||| ||||||||||||||||||||||| |||||||||||||||||||| ||||  ||||| |||||    
T  30997220 tggaccgttaatatattcctaagggctcgaatgccctctagaaaggctttggcgccctccagaagggctcatgagatctaggtgcgcc 30997133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 103 - 183
Target Start/End: Original strand, 24118787 - 24118867
Alignment:
Q  103 tcaatacattcctgagggttcgaatgccctctagaaaggcttaggcgccctccagaagggctcctgaggcctaggcgcgcc 183  Q
    |||||| |||||| |||| |||||| |||||||||||||||||  ||||||||| || ||||| ||| |||||||||||||    
T  24118787 tcaatatattcctaagggctcgaataccctctagaaaggcttacacgccctccataaaggctcatgaagcctaggcgcgcc 24118867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 128 - 183
Target Start/End: Original strand, 34240718 - 34240773
Alignment:
Q  128 gccctctagaaaggcttaggcgccctccagaagggctcctgaggcctaggcgcgcc 183  Q
    ||||||| |||||||||||| |||||||||||||||||||||| || |||||||||    
T  34240718 gccctctggaaaggcttaggtgccctccagaagggctcctgagtcccaggcgcgcc 34240773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 135 - 180
Target Start/End: Complemental strand, 11784152 - 11784107
Alignment:
Q  135 agaaaggcttaggcgccctccagaagggctcctgaggcctaggcgc 180  Q
    |||||||||||||||||||||||||||||| |||| | ||||||||    
T  11784152 agaaaggcttaggcgccctccagaagggcttctgaaggctaggcgc 11784107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 97 - 170
Target Start/End: Complemental strand, 44134362 - 44134289
Alignment:
Q  97 ggacagtcaatacattcctgagggttcgaatgccctctagaaaggcttaggcgccctccagaagggctcctgag 170  Q
    |||| ||||||| |||||| |||||   || || ||||||||||| ||||| ||||||||||||||||||||||    
T  44134362 ggaccgtcaatatattcctaagggtctaaaagcactctagaaaggtttaggtgccctccagaagggctcctgag 44134289  T

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Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 134 - 180
Target Start/End: Original strand, 15568509 - 15568555
Alignment:
Q  134 tagaaaggcttaggcgccctccagaagggctcctgaggcctaggcgc 180  Q
    |||||||||| |||||| |||||||||||||||||||| ||| ||||    
T  15568509 tagaaaggctaaggcgctctccagaagggctcctgaggactaagcgc 15568555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 128 - 164
Target Start/End: Complemental strand, 17526834 - 17526798
Alignment:
Q  128 gccctctagaaaggcttaggcgccctccagaagggct 164  Q
    ||||||||||| ||||||| |||||||||||||||||    
T  17526834 gccctctagaagggcttagacgccctccagaagggct 17526798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 96 - 144
Target Start/End: Complemental strand, 35520903 - 35520855
Alignment:
Q  96 tggacagtcaatacattcctgagggttcgaatgccctctagaaaggctt 144  Q
    ||||| ||||||| ||||||  ||| |||||||||||||||||||||||    
T  35520903 tggaccgtcaatatattcctaggggctcgaatgccctctagaaaggctt 35520855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 53; Significance: 1e-21; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 95 - 183
Target Start/End: Original strand, 18298776 - 18298864
Alignment:
Q  95 ttggacagtcaatacattcctgagggttcgaatgccctctagaaaggcttaggcgccctccagaagggctcctgaggcctaggcgcgcc 183  Q
    |||||| ||||||| |||||| || | |||||||||||||||||| ||| ||||| |||||||||||||||||||||||||| ||||||    
T  18298776 ttggaccgtcaatatattcctaagagctcgaatgccctctagaaaagctcaggcgtcctccagaagggctcctgaggcctagacgcgcc 18298864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 96 - 155
Target Start/End: Original strand, 15582951 - 15583010
Alignment:
Q  96 tggacagtcaatacattcctgagggttcgaatgccctctagaaaggcttaggcgccctcc 155  Q
    ||||| ||||||| |||||| ||||||||||||||||||||||||||| |||||||||||    
T  15582951 tggactgtcaatatattcctaagggttcgaatgccctctagaaaggctaaggcgccctcc 15583010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 102 - 180
Target Start/End: Complemental strand, 2592015 - 2591938
Alignment:
Q  102 gtcaatacattcctgagggttcgaatgccctctagaaaggcttaggcgccctccagaagggctcctgaggcctaggcgc 180  Q
    ||||||| |||||| |||| || ||| ||||||||||||||||||||| |||||||||   ||||||||||||||||||    
T  2592015 gtcaatatattcctaagggctcaaataccctctagaaaggcttaggcgtcctccagaa-aactcctgaggcctaggcgc 2591938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 128 - 179
Target Start/End: Complemental strand, 12257464 - 12257413
Alignment:
Q  128 gccctctagaaaggcttaggcgccctccagaagggctcctgaggcctaggcg 179  Q
    |||||||||||||||| ||||||||||| ||||||||| ||||| |||||||    
T  12257464 gccctctagaaaggctcaggcgccctccggaagggctcttgaggactaggcg 12257413  T

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Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 104 - 159
Target Start/End: Complemental strand, 10302176 - 10302121
Alignment:
Q  104 caatacattcctgagggttcgaatgccctctagaaaggcttaggcgccctccagaa 159  Q
    ||||| |||||| |||| || ||| ||||||||||||||||||||| |||||||||    
T  10302176 caatatattcctaagggctcaaataccctctagaaaggcttaggcgtcctccagaa 10302121  T

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Target: chr5 (Bit Score: 48; Significance: 1e-18; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 128 - 183
Target Start/End: Original strand, 16696034 - 16696089
Alignment:
Q  128 gccctctagaaaggcttaggcgccctccagaagggctcctgaggcctaggcgcgcc 183  Q
    |||||||||||||||||||||||| ||||||||||||||||| |||||||||||||    
T  16696034 gccctctagaaaggcttaggcgccttccagaagggctcctgaagcctaggcgcgcc 16696089  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 132 - 182
Target Start/End: Original strand, 27649053 - 27649103
Alignment:
Q  132 tctagaaaggcttaggcgccctccagaagggctcctgaggcctaggcgcgc 182  Q
    ||||||||||||||||| || ||||||||||||| |||||| |||||||||    
T  27649053 tctagaaaggcttaggcaccttccagaagggctcatgaggcttaggcgcgc 27649103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 93 - 170
Target Start/End: Original strand, 20568132 - 20568209
Alignment:
Q  93 atttggacagtcaatacattcctgagggttcgaatgccctctagaaaggcttaggcgccctccagaagggctcctgag 170  Q
    |||||||| ||||||| |||||| |||| ||||||||| |||||||| ||||| || |||| || | |||||||||||    
T  20568132 atttggaccgtcaatatattcctaagggctcgaatgccatctagaaatgcttaagcacccttcaaatgggctcctgag 20568209  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 129 - 178
Target Start/End: Complemental strand, 26067298 - 26067249
Alignment:
Q  129 ccctctagaaaggcttaggcgccctccagaagggctcctgaggcctaggc 178  Q
    |||||||||||||||  | || ||||||||||||||||||| ||||||||    
T  26067298 ccctctagaaaggctacgacgtcctccagaagggctcctgaagcctaggc 26067249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 140 - 180
Target Start/End: Original strand, 27073610 - 27073650
Alignment:
Q  140 ggcttaggcgccctccagaagggctcctgaggcctaggcgc 180  Q
    |||||||| ||||||||||||| |||||||||||| |||||    
T  27073610 ggcttaggtgccctccagaaggactcctgaggcctgggcgc 27073650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 8e-17; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 125 - 181
Target Start/End: Original strand, 3089071 - 3089127
Alignment:
Q  125 aatgccctctagaaaggcttaggcgccctccagaagggctcctgaggcctaggcgcg 181  Q
    |||||| |||||||||||||||||||||||| ||||||||||| |||||||||||||    
T  3089071 aatgccttctagaaaggcttaggcgccctccggaagggctcctaaggcctaggcgcg 3089127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 125 - 178
Target Start/End: Complemental strand, 52909709 - 52909656
Alignment:
Q  125 aatgccctctagaaaggcttaggcgccctccagaagggctcctgaggcctaggc 178  Q
    ||||||||| |||||||||||||||||||| |||||||||||||| ||||||||    
T  52909709 aatgccctccagaaaggcttaggcgccctctagaagggctcctgaagcctaggc 52909656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 128 - 183
Target Start/End: Original strand, 20194759 - 20194814
Alignment:
Q  128 gccctctagaaaggcttaggcgccctccagaagggctcctgaggcctaggcgcgcc 183  Q
    |||||||| || |||||||||||||||| ||||| |||||||||||||||||||||    
T  20194759 gccctctaaaatggcttaggcgccctccggaaggactcctgaggcctaggcgcgcc 20194814  T

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Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 102 - 183
Target Start/End: Original strand, 30510603 - 30510684
Alignment:
Q  102 gtcaatacattcctgagggttcgaatgccctctagaaaggcttaggcgccctccagaagggctcctgaggcctaggcgcgcc 183  Q
    ||||||| |||||  |||| |||||| || ||||||||| ||||||||||||||| | |||| ||||| ||||||| |||||    
T  30510603 gtcaatatattccaaagggctcgaataccatctagaaagacttaggcgccctccataggggcacctgaagcctaggtgcgcc 30510684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 96 - 159
Target Start/End: Complemental strand, 22224762 - 22224699
Alignment:
Q  96 tggacagtcaatacattcctgagggttcgaatgccctctagaaaggcttaggcgccctccagaa 159  Q
    ||||| ||||||| |||||| |||| || ||| ||||||||||||||||||||  |||||||||    
T  22224762 tggaccgtcaatatattcctaagggctcaaataccctctagaaaggcttaggcatcctccagaa 22224699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 95 - 181
Target Start/End: Complemental strand, 52909943 - 52909857
Alignment:
Q  95 ttggacagtcaatacattcctgagggttcgaatgccctctagaaaggcttaggcgccctccagaagggctcctgaggcctaggcgcg 181  Q
    |||||| ||||||  |||||| ||||  | ||||||||| |||||||||||||| |||||   ||||||| |||| |||||||||||    
T  52909943 ttggaccgtcaatctattcctaagggcacaaatgccctccagaaaggcttaggcaccctctgcaagggcttctgaagcctaggcgcg 52909857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 102 - 178
Target Start/End: Complemental strand, 51183921 - 51183845
Alignment:
Q  102 gtcaatacattcctgagggttcgaatgccctctagaaaggcttaggcgccctccagaagggctcctgaggcctaggc 178  Q
    ||||||| |||| | |||| |||||| ||||||||||||| || |||||||| ||||| | ||| | ||||||||||    
T  51183921 gtcaatatattcttaagggctcgaataccctctagaaaggtttgggcgcccttcagaatgactcgtaaggcctaggc 51183845  T

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Target: chr6 (Bit Score: 44; Significance: 3e-16; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 96 - 183
Target Start/End: Original strand, 24121956 - 24122043
Alignment:
Q  96 tggacagtcaatacattcctgagggttcgaatgccctctagaaaggcttaggcgccctccagaagggctcctgaggcctaggcgcgcc 183  Q
    ||||| ||||||| |||||| |||||  ||| |||||||||| ||||||||||| |||||||| ||| || |||||||||||||||||    
T  24121956 tggaccgtcaatatattcctaagggtctgaaagccctctagataggcttaggcgtcctccagatgggatcatgaggcctaggcgcgcc 24122043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 117 - 179
Target Start/End: Original strand, 14510152 - 14510214
Alignment:
Q  117 agggttcgaatgccctctagaaaggcttaggcgccctccagaagggctcctgaggcctaggcg 179  Q
    |||| ||||||||| | |||||||||||| |||||||||| ||||||||||||||||||||||    
T  14510152 agggctcgaatgccttttagaaaggcttaagcgccctccataagggctcctgaggcctaggcg 14510214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 129 - 183
Target Start/End: Complemental strand, 24250956 - 24250902
Alignment:
Q  129 ccctctagaaaggcttaggcgccctccagaagggctcctgaggcctaggcgcgcc 183  Q
    ||||||||||||||| |  ||||||||||||||||||||||||||||||||||||    
T  24250956 ccctctagaaaggctcaaacgccctccagaagggctcctgaggcctaggcgcgcc 24250902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 128 - 183
Target Start/End: Original strand, 20763849 - 20763904
Alignment:
Q  128 gccctctagaaaggcttaggcgccctccagaagggctcctgaggcctaggcgcgcc 183  Q
    |||||||||||||||| || ||||||| |||||||||||||||||||| |||||||    
T  20763849 gccctctagaaaggctcagacgccctctagaagggctcctgaggcctatgcgcgcc 20763904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 96 - 183
Target Start/End: Complemental strand, 21384367 - 21384280
Alignment:
Q  96 tggacagtcaatacattcctgagggttcgaatgccctctagaaaggcttaggcgccctccagaagggctcctgaggcctaggcgcgcc 183  Q
    ||||| ||||||| |||| | |||||  ||| ||| |||||||||||||||||||||||||||| ||||||| ||| |||||| ||||    
T  21384367 tggaccgtcaatatattcttaagggtctgaaagccttctagaaaggcttaggcgccctccagaatggctcctaaggactaggcacgcc 21384280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 128 - 171
Target Start/End: Original strand, 24122891 - 24122934
Alignment:
Q  128 gccctctagaaaggcttaggcgccctccagaagggctcctgagg 171  Q
    ||||||||||||| |||||||||||||||||||||||| |||||    
T  24122891 gccctctagaaagacttaggcgccctccagaagggctcttgagg 24122934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 128 - 166
Target Start/End: Complemental strand, 34445997 - 34445959
Alignment:
Q  128 gccctctagaaaggcttaggcgccctccagaagggctcc 166  Q
    |||||||||||||||||||| ||||||||||||||||||    
T  34445997 gccctctagaaaggcttaggtgccctccagaagggctcc 34445959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 127 - 180
Target Start/End: Complemental strand, 17536728 - 17536675
Alignment:
Q  127 tgccctctagaaaggcttaggcgccctccagaagggctcctgaggcctaggcgc 180  Q
    |||||||||||||| || || |||||||||||||   |||||||||||||||||    
T  17536728 tgccctctagaaagtctgagacgccctccagaagaattcctgaggcctaggcgc 17536675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 129 - 183
Target Start/End: Complemental strand, 36539617 - 36539563
Alignment:
Q  129 ccctctagaaaggcttaggcgccctccagaagggctcctgaggcctaggcgcgcc 183  Q
    |||||||||||||| |||||||||||| ||||||||||||  |||||||||||||    
T  36539617 ccctctagaaaggcgtaggcgccctcccgaagggctcctggagcctaggcgcgcc 36539563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 95 - 183
Target Start/End: Original strand, 25935080 - 25935168
Alignment:
Q  95 ttggacagtcaatacattcctgagggttcgaatgccctctagaaaggcttaggcgccctccagaagggctcctgaggcctaggcgcgcc 183  Q
    |||||| ||||||| |||||| ||||    || ||||||||||||||| |||||||||| |||||||||||  || |||||||||||||    
T  25935080 ttggaccgtcaatatattcctaagggcctaaaagccctctagaaaggcataggcgcccttcagaagggctcaagaagcctaggcgcgcc 25935168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 128 - 180
Target Start/End: Original strand, 49022618 - 49022670
Alignment:
Q  128 gccctctagaaaggcttaggcgccctccagaagggctcctgaggcctaggcgc 180  Q
    |||||||||||||| ||| ||||||||||||||||||||| |||| |||||||    
T  49022618 gccctctagaaaggtttaagcgccctccagaagggctcctaaggcttaggcgc 49022670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 96 - 183
Target Start/End: Original strand, 12195527 - 12195614
Alignment:
Q  96 tggacagtcaatacattcctgagggttcgaatgccctctagaaaggcttaggcgccctccagaagggctcctgaggcctaggcgcgcc 183  Q
    ||||| ||||||| |||||| |||| || ||| ||||||| ||||||||||||||||||   ||  ||||||||| ||||||||||||    
T  12195527 tggaccgtcaatatattcctaagggctcaaataccctctataaaggcttaggcgccctctgaaaaagctcctgagacctaggcgcgcc 12195614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 128 - 181
Target Start/End: Original strand, 12324553 - 12324606
Alignment:
Q  128 gccctctagaaaggcttaggcgccctccagaagggctcctgaggcctaggcgcg 181  Q
    ||||| ||||||||||||| ||||||||||| ||||||| |||||| |||||||    
T  12324553 gccctttagaaaggcttagacgccctccagatgggctccagaggcccaggcgcg 12324606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 130 - 169
Target Start/End: Complemental strand, 36544094 - 36544055
Alignment:
Q  130 cctctagaaaggcttaggcgccctccagaagggctcctga 169  Q
    ||||||||||||||||||||||||  ||||||||||||||    
T  36544094 cctctagaaaggcttaggcgccctttagaagggctcctga 36544055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 128 - 178
Target Start/End: Original strand, 12327761 - 12327811
Alignment:
Q  128 gccctctagaaaggcttaggcgccctccagaagggctcctgaggcctaggc 178  Q
    |||||||||||| |||||| ||||||| ||| ||||||| |||||||||||    
T  12327761 gccctctagaaatgcttagacgccctctagatgggctccagaggcctaggc 12327811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 129 - 170
Target Start/End: Complemental strand, 50051350 - 50051309
Alignment:
Q  129 ccctctagaaaggcttaggcgccctccagaagggctcctgag 170  Q
    ||||||||||||| ||||| | ||||||||||||||||||||    
T  50051350 ccctctagaaaggtttaggtgtcctccagaagggctcctgag 50051309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 128 - 181
Target Start/End: Original strand, 19276361 - 19276414
Alignment:
Q  128 gccctctagaaaggcttaggcgccctccagaagggctcctgaggcctaggcgcg 181  Q
    ||||||||| |||| ||||||||||||||||||||||| |||||| ||||||||    
T  19276361 gccctctaggaaggtttaggcgccctccagaagggctcatgaggcttaggcgcg 19276414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 117 - 165
Target Start/End: Original strand, 28426346 - 28426394
Alignment:
Q  117 agggttcgaatgccctctagaaaggcttaggcgccctccagaagggctc 165  Q
    |||| |||||||||||||||||||||| ||||| |||||||||||||||    
T  28426346 agggctcgaatgccctctagaaaggctaaggcgtcctccagaagggctc 28426394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 128 - 183
Target Start/End: Original strand, 14064244 - 14064299
Alignment:
Q  128 gccctctagaaaggcttaggcgccctccagaagggctcctgaggcctaggcgcgcc 183  Q
    ||||| || ||||||| || ||||||||||||||| |||||||||||||| |||||    
T  14064244 gccctttaaaaaggctcagacgccctccagaagggatcctgaggcctaggtgcgcc 14064299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0056 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0056
Description:

Target: scaffold0056; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 128 - 183
Target Start/End: Original strand, 19096 - 19151
Alignment:
Q  128 gccctctagaaaggcttaggcgccctccagaagggctcctgaggcctaggcgcgcc 183  Q
    |||||||||||||| | || |||||||||||||||||| |||||||||| ||||||    
T  19096 gccctctagaaaggttcagacgccctccagaagggctcatgaggcctagacgcgcc 19151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0102 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0102
Description:

Target: scaffold0102; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 128 - 176
Target Start/End: Original strand, 25262 - 25310
Alignment:
Q  128 gccctctagaaaggcttaggcgccctccagaagggctcctgaggcctag 176  Q
    |||||||| ||||||| |||||||||||||||| |||||||||| ||||    
T  25262 gccctctataaaggctcaggcgccctccagaagtgctcctgaggactag 25310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0474 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0474
Description:

Target: scaffold0474; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 110 - 177
Target Start/End: Original strand, 6339 - 6406
Alignment:
Q  110 attcctgagggttcgaatgccctctagaaaggcttaggcgccctccagaagggctcctgaggcctagg 177  Q
    |||||| ||||  ||||| |||||||||||  |||||||||||| ||||||||||||| | |||||||    
T  6339 attcctaagggcacgaattccctctagaaatacttaggcgcccttcagaagggctcctaaagcctagg 6406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0374 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0374
Description:

Target: scaffold0374; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 123 - 177
Target Start/End: Original strand, 11966 - 12020
Alignment:
Q  123 cgaatgccctctagaaaggcttaggcgccctccagaagggctcctgaggcctagg 177  Q
    |||||| |||| |||||||||||| |||||| ||||||| ||||||| |||||||    
T  11966 cgaatggcctccagaaaggcttagacgcccttcagaaggactcctgaagcctagg 12020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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