View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19475_low_95 (Length: 208)
Name: NF19475_low_95
Description: NF19475
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19475_low_95 |
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Alignment Details
Target: chr2 (Bit Score: 96; Significance: 3e-47; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 22 - 125
Target Start/End: Original strand, 42576091 - 42576194
Alignment:
| Q |
22 |
attatacttcatgtcaatcctgaaaaagcatagaataaaaatcatttgtaaattttatactttcaaacctcccataaatttgaaactaattacacaggta |
121 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| |
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| T |
42576091 |
attatacttcatgtcaatcctgaaaaagcatagaataaaaatcatttgtaaattttatactttcaaacctcccataaatttgaaactaattaaataggta |
42576190 |
T |
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| Q |
122 |
aatg |
125 |
Q |
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|||| |
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| T |
42576191 |
aatg |
42576194 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 117 - 192
Target Start/End: Original strand, 42576746 - 42576821
Alignment:
| Q |
117 |
aggtaaatggttccaaacatatgtaactaattggttcaaatgttaataccatgaacgtttctttatttcacagtat |
192 |
Q |
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| T |
42576746 |
aggtaaatggttccaaacatatgtaaccaattggttcaaatgttaataccatgaatgtttctttatttcacagtat |
42576821 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 47; Significance: 5e-18; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 22 - 99
Target Start/End: Original strand, 14956819 - 14956894
Alignment:
| Q |
22 |
attatacttcatgtcaatcctgaaaaagcatagaataaaaatcatttgtaaattttatactttcaaacctcccataaa |
99 |
Q |
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|||||| |||||||| ||||||||||| |||| ||||||||||||||||||||| ||| |||||||||||||||||| |
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| T |
14956819 |
attatatttcatgtctatcctgaaaaaacata--ataaaaatcatttgtaaatttaataatttcaaacctcccataaa |
14956894 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 59 - 99
Target Start/End: Original strand, 14952016 - 14952056
Alignment:
| Q |
59 |
aaaatcatttgtaaattttatactttcaaacctcccataaa |
99 |
Q |
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|||||||||||||||||| |||||||||||||||||||||| |
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| T |
14952016 |
aaaatcatttgtaaatttaatactttcaaacctcccataaa |
14952056 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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