View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19475_low_96 (Length: 206)
Name: NF19475_low_96
Description: NF19475
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19475_low_96 |
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Alignment Details
Target: chr2 (Bit Score: 169; Significance: 8e-91; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 169; E-Value: 8e-91
Query Start/End: Original strand, 11 - 187
Target Start/End: Complemental strand, 39140328 - 39140152
Alignment:
| Q |
11 |
ataatactcaagttacatgtgaatatgaaatgtttctagataacaaattcaagcctctggaaaattaaaatatgatagaaaggaaggttaagaagccgag |
110 |
Q |
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| T |
39140328 |
ataatactcaagttacatgtgaatatgaaatgtttctaggtaacaaattcaagcctctggaaaattaaaatatgatagaaaggaagattaagaagccgag |
39140229 |
T |
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| Q |
111 |
agatagtcctgttaaatttgtcatatgatttttcaaactttacaattagagattttaaaaagaaagagagtcctacc |
187 |
Q |
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| T |
39140228 |
agatagtcctgttaaatttgtcatatgatttttcaaactttacaattagagattttaaaaagaaagagagtcctacc |
39140152 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 117 - 177
Target Start/End: Complemental strand, 39456988 - 39456928
Alignment:
| Q |
117 |
tcctgttaaatttgtcatatgatttttcaaactttacaattagagattttaaaaagaaaga |
177 |
Q |
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| T |
39456988 |
tcctgttaaatttatcatatcatttttcatactttacaattagatattttaaaaagtaaga |
39456928 |
T |
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