View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19476_high_2 (Length: 680)
Name: NF19476_high_2
Description: NF19476
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19476_high_2 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 590; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 590; E-Value: 0
Query Start/End: Original strand, 8 - 658
Target Start/End: Original strand, 53096085 - 53096735
Alignment:
| Q |
8 |
ggacatcatcaccaaaagcattcataagcttacttgctttagaggatcacattttgcaggcatcggaggatccttagagagagatatgtcaagataatgg |
107 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53096085 |
ggacatcattaccaaaagcattcataagcttacttgctttagaggatcacattttgcaggcatcggaggatccttagagagagatatgtcaagataatgg |
53096184 |
T |
|
| Q |
108 |
cactgctgctgaagaataccatttttagtttcaggaaaaatgtccaaactagcagaatgaactgttccaacatcaaaactatttccatttctagtcccat |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
53096185 |
cactgctgctgaagaataccatttttagtttcaggaaaaatgtccaaactagcagaatgaactgttccaacatcaaaactatttccatttctcgtcccat |
53096284 |
T |
|
| Q |
208 |
ttgagttttgtgctttgattagaactccacactttgatccttggtgtactctgggttggtgacattcataacgctcgggttctttggcaccatgnnnnnn |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53096285 |
ttgagttttgtgctttgattagaactccacactttgatccttggtgtactctgggttggtgacattcataacgctcgggttctttggcaccatgtttttt |
53096384 |
T |
|
| Q |
308 |
nggaacttctaaactccggatgagctgactaatgtgaacatgagctgcacaactcttccatgactttttatgaacaacaggttcggaaatctgcattgtc |
407 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
53096385 |
tggaacttctaaactccggatgagctgactaatgtgaacatgagctgcacaactcttccatgactttttatgaacaacaggttcggaaatctgcatcgtc |
53096484 |
T |
|
| Q |
408 |
attaaacatttattattggaaacaactaataggcatttgagtggagtgcatcaactatgatgaaaaacttcttaatcatgcaaaacaacaatactaagca |
507 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53096485 |
attaaacatttattattggaaacaactaataggcatttgagtggagagcatcaactatgatgaaaaacttcttaatcatgcaaaacaacaatactaagca |
53096584 |
T |
|
| Q |
508 |
tgaatttttagtttcttacctttccacctgaagaacaactttccatcaaatcgtgtttggagttgcaaatagcagcattcagccaatgtggagctttagc |
607 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53096585 |
tgaatttttagtttcttacctttccacctgaagaacaactttccatcaaatcgtgtttggagttgcaaatagcagcattcagccaatgtggagctttagc |
53096684 |
T |
|
| Q |
608 |
ggcagcagaagaccttaagnnnnnnnntccatcgaatttggatgagcagaa |
658 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
53096685 |
ggcagcagaagaccttaagaaaaaaaatccatcgaatttggatgagcagaa |
53096735 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 82; Significance: 2e-38; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 147 - 296
Target Start/End: Complemental strand, 1369483 - 1369335
Alignment:
| Q |
147 |
atgtccaaactagcagaatgaactgttccaacatcaaaactatttccatttctagtcccatttgagttttgtgctttgattagaactccacactttgatc |
246 |
Q |
| |
|
||||||||||||| || ||||||||||||| |||||||||||||||||||||| ||||||| |||||||||||||||||||| | | ||| ||||||| |
|
|
| T |
1369483 |
atgtccaaactagtagtatgaactgttccagcatcaaaactatttccatttctcatcccattagagttttgtgctttgattagga-tatacattttgatc |
1369385 |
T |
|
| Q |
247 |
cttggtgtactctgggttggtgacattcataacgctcgggttctttggca |
296 |
Q |
| |
|
|||||| ||||||| ||||||||||||||||||||| | |||||||||| |
|
|
| T |
1369384 |
tttggtgaactctggtttggtgacattcataacgctcagattctttggca |
1369335 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University