View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19476_high_4 (Length: 562)
Name: NF19476_high_4
Description: NF19476
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19476_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 465; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 465; E-Value: 0
Query Start/End: Original strand, 16 - 555
Target Start/End: Original strand, 47332022 - 47332563
Alignment:
| Q |
16 |
acatatcatattcccattgcgagatccatactagcaataaggatgcatgtagaaatattaggagcgaatacggtgttatcaaaactaaattcaaattatg |
115 |
Q |
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| T |
47332022 |
acatatcatatttccattgcgagatccatactagcaataaggatgcatatagaaatattaggagcgaatacggtgttatcaaaactaaattcaaattatg |
47332121 |
T |
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| Q |
116 |
ataatgttttaaattaagaccatacttttatcatttccgtgttttggacgagttggtaatgtaatttttcgctaggnnnnnnnnnn--ttcaaagtttga |
213 |
Q |
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| T |
47332122 |
ataatgttttaaattaagaccatacttttatcaattccgtgttttggacgagtaggtaatgtaatttttggctaggaaaacaaaaaaattcaaagtttga |
47332221 |
T |
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| Q |
214 |
tttctgctacccacttagtctcactcaaaagatcaaaaccttagtatatcttgcgacgtctgcaagaggttaaagaggctaataatgatgggttaaaata |
313 |
Q |
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| T |
47332222 |
tttctgctacccacttagtctcactcaaaagatcaaaaccttagtatatcttgcgacgtctgcaagaggttaaagaggctaataatgatgggttaaaata |
47332321 |
T |
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| Q |
314 |
acattagacatatatgtataggttgatgtaatacactagaaagtattttattaattttcagttaaaattattatggggtaggtaggtaggcctgcacgag |
413 |
Q |
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| T |
47332322 |
acattagacatatatgtataggttgatgtaatatactagaaagtattttatgaattttcagttaaaattattatggggtaggtaggtaggcctgcacgag |
47332421 |
T |
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| Q |
414 |
gaagcaaccaagtctgttccataacaatattgttattaaggtgacacatttgaccatattgtcaaactttgacttttcaaaagaatcatcttgtgtctta |
513 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||| |
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| T |
47332422 |
gaagcaaccaagtctgttccataacaatattgttattaaggtgacacatttgaccatattgtcaaactttgacttttgaaaagaaccatcttgtgtctta |
47332521 |
T |
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| Q |
514 |
cttatattaagcttactcactgtaacctattaaccttctctg |
555 |
Q |
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| T |
47332522 |
cttatattaagcttactcactgtaacctattaaccttctctg |
47332563 |
T |
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