View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19476_high_5 (Length: 552)
Name: NF19476_high_5
Description: NF19476
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19476_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 437; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 437; E-Value: 0
Query Start/End: Original strand, 16 - 534
Target Start/End: Original strand, 29624084 - 29624603
Alignment:
| Q |
16 |
atcaataacttccctccctccaaacataaaaacacagacagaatgaaacaaagccactacaattgcaacaaaccctaaagaaatgttgaaactactgtct |
115 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||| |
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| T |
29624084 |
atcaataacttccctccctccaaacataaaaacacagacagaatgaaacaaagccactacaattgcaacaaaccctaaagaaacgctgaaactactgtct |
29624183 |
T |
|
| Q |
116 |
cacaataactaagcatcccatgacaacatcatacacaagagtttcaatgacttcctcccctaattatttatcaaacttgtaatacaagcatacaacgata |
215 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
29624184 |
cacaataactaagcatcccatgataacatcatacacaagagtttcaattacttcctcccctaattatttatcaaacttgtaatacaagcatacaatgata |
29624283 |
T |
|
| Q |
216 |
ctattatttccaaagcttgaaaatttctcatctgtcatcaaaacaaaataaatcaaaaatcaagaacaactttctatttcatcaataaaagggaaccaat |
315 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||| |||| |
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| T |
29624284 |
ctattatttccaaagcttgaaaatttatcatctgtcatcaaaacaaaataaatcaaaaat-aagaacaactttctatttcatccataaaagggaatcaat |
29624382 |
T |
|
| Q |
316 |
ttcatcaaaaccaca--atatagaattcattgaaacgaggatgaaatatcagtaaagcaaagaggaaaagacgaagnnnnnnntatatgattggagacga |
413 |
Q |
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||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
29624383 |
ttcatcaaaaccacaatatatagaattcattgaaacaaggatgaaatatcagtaaagcaaagaggaaaagacgaagaaaaatatatatgattggagacga |
29624482 |
T |
|
| Q |
414 |
ggttggaggcaaagatagttggagagagcacgattgcaacgcatgaaatggaaggttgaaaccaaagaactgataaagatgaatgttgaaggagatatta |
513 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
29624483 |
ggttggaggcaaagatagttggagagagcacgattgcaacgaatgaaatggaaggttgaaaccaaagaactgataaagatgaatgttgaaggagagatta |
29624582 |
T |
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| Q |
514 |
aaatgtgacgtttgaagagtg |
534 |
Q |
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||||||||||||||||||||| |
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| T |
29624583 |
aaatgtgacgtttgaagagtg |
29624603 |
T |
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