View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19476_high_9 (Length: 440)
Name: NF19476_high_9
Description: NF19476
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19476_high_9 |
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Alignment Details
Target: chr7 (Bit Score: 394; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 1 - 423
Target Start/End: Complemental strand, 988082 - 987664
Alignment:
| Q |
1 |
acataaaaatatatatttgtcttactttgttggaaaaatagctttgcctacaatgaacaaagcagaggtgcttggagatacgtttagtaacactgaaaca |
100 |
Q |
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| T |
988082 |
acataaaaatatatatttgtcttactttgttggaaaaatagctttgcctacaatgaacaaagcagaggtgcttggagatacgtttagtaacactgaaaca |
987983 |
T |
|
| Q |
101 |
agtggtgtggggtggcaaacggttaattatcaataacttttcattttaatagaaatatgaaagcttttagtacttaaaaatacatagaaaaggaaagttc |
200 |
Q |
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| T |
987982 |
agtggtgtggggtggcaaccggttaattatcaataacttttcattttaatagaaatatgaaagcttttagtacttaaaaatacatagaaaaggaaagttc |
987883 |
T |
|
| Q |
201 |
atcaaaattcgctatcaattttgttgttggatataagcattgtcgtttattatattaaacaaaagagtttaccaaaattcgtagaaatcataactttata |
300 |
Q |
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| T |
987882 |
atcaaaattcgctatcaattttgttgttggatataagcattgtcgtttattatattaaacaaaagagtttaccaaaattcgtagaaatcataactttata |
987783 |
T |
|
| Q |
301 |
gtattaatattgttcttgtaacaaaatgtttacaaccatagtcttaatatccatatacaatatatctagccggtggaggcggaggtgaatccgaacgtgg |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||| ||||| |
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| T |
987782 |
gtattaatattgttcttgtaacaaaatgtttacaaccataggcttaatatccatatacaata----tagccggtggaggcggaggtgaatccgagcgtgg |
987687 |
T |
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| Q |
401 |
aagtagatgtggatgacctaaag |
423 |
Q |
| |
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| T |
987686 |
aagtagatgtggatgacctaaag |
987664 |
T |
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