View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19476_low_1 (Length: 717)
Name: NF19476_low_1
Description: NF19476
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19476_low_1 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 627; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 627; E-Value: 0
Query Start/End: Original strand, 12 - 695
Target Start/End: Original strand, 53096052 - 53096735
Alignment:
| Q |
12 |
atcatcagatcatgaggaagagggaacaaggggggacatcattaccaaaagcattcataagcttacttgctttagaggatcacattttgcaggcatcgga |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53096052 |
atcatcagatcatgaggaagagggaacaaggggggacatcattaccaaaagcattcataagcttacttgctttagaggatcacattttgcaggcatcgga |
53096151 |
T |
|
| Q |
112 |
ggatccttagagagagatatgtcaagataatggcactgctgctgaagaataccatttttagtttcaggaaaaatgtccaaactagcagaatgaactgttc |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53096152 |
ggatccttagagagagatatgtcaagataatggcactgctgctgaagaataccatttttagtttcaggaaaaatgtccaaactagcagaatgaactgttc |
53096251 |
T |
|
| Q |
212 |
caacatcaaaactatttccatttctagtcccatttgagttttgtgctttgattagaactccacactttgatccttggtgtactctgggttggtgacattc |
311 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53096252 |
caacatcaaaactatttccatttctcgtcccatttgagttttgtgctttgattagaactccacactttgatccttggtgtactctgggttggtgacattc |
53096351 |
T |
|
| Q |
312 |
ataacgctcgggttctttggcaccatgnnnnnnnggaacttctaaactccggatgagctgactaatgtgaacatgagctgcacaactcttccatgacttt |
411 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53096352 |
ataacgctcgggttctttggcaccatgtttttttggaacttctaaactccggatgagctgactaatgtgaacatgagctgcacaactcttccatgacttt |
53096451 |
T |
|
| Q |
412 |
ttatgaacaacaggttcggaaatctgcattgtcattaaacatttattattggaaacaactaataggcatttgagtggagtgcatcaactatgatgaaaaa |
511 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
53096452 |
ttatgaacaacaggttcggaaatctgcatcgtcattaaacatttattattggaaacaactaataggcatttgagtggagagcatcaactatgatgaaaaa |
53096551 |
T |
|
| Q |
512 |
cttcttaatcatgcaaaacaacaatactaagcatgaatttttagtttcttacctttccacctgaagaacaactttccatcaaatcgtgtttggagttgca |
611 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53096552 |
cttcttaatcatgcaaaacaacaatactaagcatgaatttttagtttcttacctttccacctgaagaacaactttccatcaaatcgtgtttggagttgca |
53096651 |
T |
|
| Q |
612 |
aatagcagcattcagccaatgtggagctttagcggcagcagaagaccttaagnnnnnnnntccatcgaatttggatgagcagaa |
695 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
53096652 |
aatagcagcattcagccaatgtggagctttagcggcagcagaagaccttaagaaaaaaaatccatcgaatttggatgagcagaa |
53096735 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 82; Significance: 2e-38; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 184 - 333
Target Start/End: Complemental strand, 1369483 - 1369335
Alignment:
| Q |
184 |
atgtccaaactagcagaatgaactgttccaacatcaaaactatttccatttctagtcccatttgagttttgtgctttgattagaactccacactttgatc |
283 |
Q |
| |
|
||||||||||||| || ||||||||||||| |||||||||||||||||||||| ||||||| |||||||||||||||||||| | | ||| ||||||| |
|
|
| T |
1369483 |
atgtccaaactagtagtatgaactgttccagcatcaaaactatttccatttctcatcccattagagttttgtgctttgattagga-tatacattttgatc |
1369385 |
T |
|
| Q |
284 |
cttggtgtactctgggttggtgacattcataacgctcgggttctttggca |
333 |
Q |
| |
|
|||||| ||||||| ||||||||||||||||||||| | |||||||||| |
|
|
| T |
1369384 |
tttggtgaactctggtttggtgacattcataacgctcagattctttggca |
1369335 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University