View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19476_low_10 (Length: 401)
Name: NF19476_low_10
Description: NF19476
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19476_low_10 |
 | |
|
| [»] scaffold0018 (2 HSPs) |
| | |
|
Alignment Details
Target: scaffold0018 (Bit Score: 208; Significance: 1e-114; HSPs: 2)
Name: scaffold0018
Description:
Target: scaffold0018; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 123 - 382
Target Start/End: Original strand, 38937 - 39203
Alignment:
| Q |
123 |
gttacaatgccactttcatcatacttgttcttataaatccaattagcatcaatgacattcaaccgttccgctataggaaccaatttccaaattgcattt- |
221 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||| |
|
|
| T |
38937 |
gttacaatgccactttcatcatacttgttcttatagatccaattagcatcaatgacattcaactgttccgctataggaaccaatttccaaactgcatttt |
39036 |
T |
|
| Q |
222 |
ctcttgtattgaccaagttcctcttgcat------aacatttatccagaacttatgagttaatgcctctttcagattcttagattaaaacttagaaacaa |
315 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||| |
|
|
| T |
39037 |
ctcttgtattgaccaagttcctcttgcataagcataacatttatccagaacttatgagttaagacctctttcacattcttagattaaaacttagaaacaa |
39136 |
T |
|
| Q |
316 |
aacaagagtcggaaattacatctttggatctggtggtaatcccttcattcagattccgtaggataag |
382 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39137 |
aacaagagttggaaattacatctttggatctggtggtaatcccttcattcagattccgtaggataag |
39203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0018; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 5 - 130
Target Start/End: Original strand, 37934 - 38059
Alignment:
| Q |
5 |
gtcatcaatagaaattagagttaccatgatcgttcctccatcaatattcttcacatacaaggtcttgtcaatttcacctttgctgcatccttgagccact |
104 |
Q |
| |
|
||||||||| ||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37934 |
gtcatcaatggaaattagagttaccatgatctttcctccatcaacattcttcacatacaaggtcttgtcaatttcacctttgctgcatccttgagccact |
38033 |
T |
|
| Q |
105 |
aagcgaaccttgttcatagttacaat |
130 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
38034 |
aagcgaaccttgttcatagttacaat |
38059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 43 - 129
Target Start/End: Complemental strand, 17535892 - 17535806
Alignment:
| Q |
43 |
catcaatattcttcacatacaaggtcttgtcaatttcacctttgctgcatccttgagccactaagcgaaccttgttcatagttacaa |
129 |
Q |
| |
|
|||||| |||||||| ||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
17535892 |
catcaacattcttcatggacaaggtcttgtcaattccacctttgctgcatccctgagccactaagcgaaccttgttcatagttacaa |
17535806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University